Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001934A_C01 KMC001934A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568298.1| putative protein; protein id: At5g14310.1, supp... 100 8e-21
pir||T48604 hypothetical protein F18O22.100 - Arabidopsis thalia... 100 8e-21
ref|NP_189367.1| esterase, putative; protein id: At3g27320.1 [Ar... 100 1e-20
dbj|BAB90534.1| B1065G12.16 [Oryza sativa (japonica cultivar-gro... 99 4e-20
ref|NP_197808.1| putative protein; protein id: At5g24200.1 [Arab... 32 3.3
>ref|NP_568298.1| putative protein; protein id: At5g14310.1, supported by cDNA:
153235. [Arabidopsis thaliana]
gi|21553610|gb|AAM62703.1| esterase, putative
[Arabidopsis thaliana] gi|23306378|gb|AAN17416.1|
putative protein [Arabidopsis thaliana]
gi|24899763|gb|AAN65096.1| putative protein [Arabidopsis
thaliana]
Length = 446
Score = 100 bits (250), Expect = 8e-21
Identities = 46/52 (88%), Positives = 50/52 (95%)
Frame = -2
Query: 515 NVDAPVLEYKDGVHEFATLDVLLQSPQAQVCAEDIAIWVKKYISLRGHEFSY 360
NVD+PVLEYKD VHEFATLD+LL++PQAQ CAEDIAIWVKKYISLRGHEFSY
Sbjct: 395 NVDSPVLEYKDAVHEFATLDMLLKTPQAQACAEDIAIWVKKYISLRGHEFSY 446
>pir||T48604 hypothetical protein F18O22.100 - Arabidopsis thaliana
gi|7573456|emb|CAB87770.1| putative protein [Arabidopsis
thaliana]
Length = 439
Score = 100 bits (250), Expect = 8e-21
Identities = 46/52 (88%), Positives = 50/52 (95%)
Frame = -2
Query: 515 NVDAPVLEYKDGVHEFATLDVLLQSPQAQVCAEDIAIWVKKYISLRGHEFSY 360
NVD+PVLEYKD VHEFATLD+LL++PQAQ CAEDIAIWVKKYISLRGHEFSY
Sbjct: 388 NVDSPVLEYKDAVHEFATLDMLLKTPQAQACAEDIAIWVKKYISLRGHEFSY 439
>ref|NP_189367.1| esterase, putative; protein id: At3g27320.1 [Arabidopsis thaliana]
gi|9294225|dbj|BAB02127.1| gene_id:K17E12.14~unknown
protein [Arabidopsis thaliana]
Length = 460
Score = 100 bits (249), Expect = 1e-20
Identities = 46/52 (88%), Positives = 49/52 (93%)
Frame = -2
Query: 515 NVDAPVLEYKDGVHEFATLDVLLQSPQAQVCAEDIAIWVKKYISLRGHEFSY 360
NVDAPVLEYKD VHEFATLD+LL++PQAQ CAEDIAIW KKYISLRGHEFSY
Sbjct: 409 NVDAPVLEYKDAVHEFATLDMLLRTPQAQACAEDIAIWAKKYISLRGHEFSY 460
>dbj|BAB90534.1| B1065G12.16 [Oryza sativa (japonica cultivar-group)]
Length = 410
Score = 98.6 bits (244), Expect = 4e-20
Identities = 45/52 (86%), Positives = 49/52 (93%)
Frame = -2
Query: 515 NVDAPVLEYKDGVHEFATLDVLLQSPQAQVCAEDIAIWVKKYISLRGHEFSY 360
NVDAPVL+YKD VHEFATLDV L++PQAQ CAEDIAIW+KKYISLRGHEFSY
Sbjct: 359 NVDAPVLDYKDTVHEFATLDVFLKTPQAQACAEDIAIWMKKYISLRGHEFSY 410
>ref|NP_197808.1| putative protein; protein id: At5g24200.1 [Arabidopsis thaliana]
gi|9757929|dbj|BAB08411.1|
gb|AAD29063.1~gene_id:K12G2.9~similar to unknown protein
[Arabidopsis thaliana]
Length = 342
Score = 32.3 bits (72), Expect = 3.3
Identities = 19/68 (27%), Positives = 31/68 (44%)
Frame = +1
Query: 55 YTGKNGREISKCGMHEMNASHWLN*SYSLRQVYLTRKNGRLAGGTKMEPVNIQHLINHQN 234
YT + R+ ++CG W ++L Q +G + G Q+ IN+QN
Sbjct: 39 YTMERDRQQNRCGSDSKARPWWAFYRFTLYQQLRDALDGSIYGAV------FQNDINYQN 92
Query: 235 QSNNIIPP 258
N+I+PP
Sbjct: 93 TPNSIVPP 100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,949,408
Number of Sequences: 1393205
Number of extensions: 10791156
Number of successful extensions: 42112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42109
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
