Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001930A_C01 KMC001930A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H96673 hypothetical protein F16G16.2 [imported] - Arabidops... 81 1e-14
ref|NP_176683.1| G-protein beta-subunit (transducin) family; pro... 81 1e-14
gb|AAN17449.1| Unknown protein [Arabidopsis thaliana] 81 1e-14
ref|NP_060376.1| hypothetical protein FLJ20624 [Homo sapiens] gi... 44 0.002
gb|AAH10907.1|AAH10907 Unknown (protein for MGC:13426) [Homo sap... 39 0.047
>pir||H96673 hypothetical protein F16G16.2 [imported] - Arabidopsis thaliana
gi|6227001|gb|AAF06037.1|AC009360_2 Contains 3 PF|00400
WD40, G-beta repeat domains. [Arabidopsis thaliana]
Length = 365
Score = 80.9 bits (198), Expect = 1e-14
Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -3
Query: 562 DDPYLVASASSDGTIRVWDVRMAATEKPTPLAECKTESRLTCLSGSSMKLI--PKQGKGN 389
+DPYL+ SASSDG IRVWDVRMAA E PLAE T+SRLTCL+GS++K + P+ GK
Sbjct: 294 EDPYLIGSASSDGIIRVWDVRMAAKENTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQE 353
Query: 388 PKVEDQMME 362
P+ D+ E
Sbjct: 354 PQKVDEEHE 362
>ref|NP_176683.1| G-protein beta-subunit (transducin) family; protein id: At1g65030.1
[Arabidopsis thaliana]
Length = 345
Score = 80.9 bits (198), Expect = 1e-14
Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -3
Query: 562 DDPYLVASASSDGTIRVWDVRMAATEKPTPLAECKTESRLTCLSGSSMKLI--PKQGKGN 389
+DPYL+ SASSDG IRVWDVRMAA E PLAE T+SRLTCL+GS++K + P+ GK
Sbjct: 274 EDPYLIGSASSDGIIRVWDVRMAAKENTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQE 333
Query: 388 PKVEDQMME 362
P+ D+ E
Sbjct: 334 PQKVDEEHE 342
>gb|AAN17449.1| Unknown protein [Arabidopsis thaliana]
Length = 345
Score = 80.9 bits (198), Expect = 1e-14
Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -3
Query: 562 DDPYLVASASSDGTIRVWDVRMAATEKPTPLAECKTESRLTCLSGSSMKLI--PKQGKGN 389
+DPYL+ SASSDG IRVWDVRMAA E PLAE T+SRLTCL+GS++K + P+ GK
Sbjct: 274 EDPYLIGSASSDGIIRVWDVRMAAKENTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQE 333
Query: 388 PKVEDQMME 362
P+ D+ E
Sbjct: 334 PQKVDEEHE 342
>ref|NP_060376.1| hypothetical protein FLJ20624 [Homo sapiens]
gi|7020851|dbj|BAA91296.1| unnamed protein product [Homo
sapiens]
Length = 391
Score = 43.5 bits (101), Expect = 0.002
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = -3
Query: 553 YLVASASSDGTIRVWDVRMAATEKPTPLAECKTESRLTCL-----SGSSMKLIPKQGKGN 389
+++ SASSDG I++W ++ P+ L E T +RLTCL + MK +P + +
Sbjct: 260 HVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLGVWLDKVADMKSLPPAAEPS 319
Query: 388 PKVEDQMMEGE 356
P ++Q G+
Sbjct: 320 PVSKEQSKIGK 330
>gb|AAH10907.1|AAH10907 Unknown (protein for MGC:13426) [Homo sapiens]
Length = 392
Score = 38.9 bits (89), Expect = 0.047
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -3
Query: 553 YLVASASSDGTIRVWDVRMAATEKPTPLAECKTESRLTCL 434
+++ SASSDG I++W + P+ L E T +RLTCL
Sbjct: 260 HVIVSASSDGFIKMWKLEQDKKVPPSLLCEINTNARLTCL 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,976,545
Number of Sequences: 1393205
Number of extensions: 9656645
Number of successful extensions: 27382
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 24303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27355
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
