Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001928A_C01 KMC001928A_c01
(862 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563657.1| ATP-dependent Clp protease proteolytic subunit ... 237 2e-61
emb|CAC67407.1| Clp protease 2 proteolytic subunit [Lycopersicon... 228 7e-59
gb|ZP_00108594.1| hypothetical protein [Nostoc punctiforme] 177 1e-43
ref|NP_485281.1| ATP-dependent Clp protease proteolytic subunit ... 177 2e-43
ref|NP_442765.1| ATP-dependent protease; ClpP [Synechocystis sp.... 174 1e-42
>ref|NP_563657.1| ATP-dependent Clp protease proteolytic subunit (ClpP5); protein id:
At1g02560.1, supported by cDNA: 106825., supported by
cDNA: gi_5360578 [Arabidopsis thaliana]
gi|25453517|pir||T52455 ATP-dependent clp proteinase (EC
3.4.21.-) chain P1 [imported] - Arabidopsis thaliana
gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease
subunit ClpP [Arabidopsis thaliana]
gi|5360579|dbj|BAA82065.1| nClpP1 [Arabidopsis thaliana]
gi|9972387|gb|AAG10637.1|AC022521_15 ATP-dependent Clp
protease subunit ClpP [Arabidopsis thaliana]
gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease
proteolytic subunit ClpP5 [Arabidopsis thaliana]
Length = 298
Score = 237 bits (604), Expect = 2e-61
Identities = 115/119 (96%), Positives = 118/119 (98%)
Frame = -1
Query: 862 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 683
FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID
Sbjct: 173 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 232
Query: 682 IQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPAQS 506
IQANEMLHHKANLNGYL+YHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNP ++
Sbjct: 233 IQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKA 291
>emb|CAC67407.1| Clp protease 2 proteolytic subunit [Lycopersicon esculentum]
Length = 299
Score = 228 bits (582), Expect = 7e-59
Identities = 110/119 (92%), Positives = 117/119 (97%)
Frame = -1
Query: 862 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 683
FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DI+
Sbjct: 170 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIE 229
Query: 682 IQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPAQS 506
IQANEMLHHKANLNGYL+Y TGQSL++INQDTDRDFFMSAKEAKEYGLIDGVIMNP ++
Sbjct: 230 IQANEMLHHKANLNGYLAYQTGQSLDRINQDTDRDFFMSAKEAKEYGLIDGVIMNPMKA 288
>gb|ZP_00108594.1| hypothetical protein [Nostoc punctiforme]
Length = 203
Score = 177 bits (450), Expect = 1e-43
Identities = 89/123 (72%), Positives = 103/123 (83%), Gaps = 1/123 (0%)
Frame = -1
Query: 862 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 683
FDTM+HIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG TDI+
Sbjct: 76 FDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIE 135
Query: 682 IQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI-MNPAQS 506
IQA E+L+HK LN YL+ HTGQ +E+I +DT+RDFFMS +EA+EYGLID VI + A S
Sbjct: 136 IQAREILYHKKRLNDYLADHTGQPIERIAEDTERDFFMSPEEAREYGLIDQVIDRHAAGS 195
Query: 505 SPA 497
PA
Sbjct: 196 RPA 198
>ref|NP_485281.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120] gi|21759071|sp|Q8YXH5|CLP1_ANASP ATP-dependent Clp
protease proteolytic subunit 1 (Endopeptidase Clp 1)
gi|25289874|pir||AC1961 ATP-dependent Clp proteinase
proteolytic chain [imported] - Nostoc sp. (strain PCC
7120) gi|17130585|dbj|BAB73195.1| ATP-dependent Clp
protease proteolytic subunit [Nostoc sp. PCC 7120]
Length = 204
Score = 177 bits (448), Expect = 2e-43
Identities = 87/120 (72%), Positives = 99/120 (82%)
Frame = -1
Query: 862 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 683
FDTM+HIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG TDI+
Sbjct: 77 FDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIE 136
Query: 682 IQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPAQSS 503
IQA E+L+HK LN YL+ HTGQ +E+I +DT+RDFFMS EAK+YGLID VI A S
Sbjct: 137 IQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVIDRHAAGS 196
>ref|NP_442765.1| ATP-dependent protease; ClpP [Synechocystis sp. PCC 6803]
gi|1705930|sp|P54416|CLP1_SYNY3 ATP-dependent Clp
protease proteolytic subunit 1 (Endopeptidase Clp 1)
gi|7435687|pir||S75989 endopeptidase Clp (EC 3.4.21.92)
chain P1 [similarity] - Synechocystis sp. (strain PCC
6803)
Length = 198
Score = 174 bits (442), Expect = 1e-42
Identities = 89/122 (72%), Positives = 102/122 (82%), Gaps = 1/122 (0%)
Frame = -1
Query: 862 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 683
FDTM IRPDV T+C+GLAASMGAFLLSAG KGKR SLPNSRIMIHQPLGGAQG TDI+
Sbjct: 76 FDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIE 135
Query: 682 IQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI-MNPAQS 506
IQA E+L+ KA LN +L+ HTG+SLE+I DT+RDFFMSA+E+KEYGLID VI P+ S
Sbjct: 136 IQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLIDQVINRRPSAS 195
Query: 505 SP 500
P
Sbjct: 196 DP 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 744,808,443
Number of Sequences: 1393205
Number of extensions: 16302727
Number of successful extensions: 31758
Number of sequences better than 10.0: 311
Number of HSP's better than 10.0 without gapping: 30767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31678
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45709790868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
