Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001923A_C01 KMC001923A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200201.2| putative protein; protein id: At5g53900.1, supp... 74 1e-12
dbj|BAB10720.1| gb|AAF34833.1~gene_id:K19P17.6~similar to unknow... 74 1e-12
dbj|BAC24922.1| OJ1606_D04.10 [Oryza sativa (japonica cultivar-g... 61 1e-08
ref|NP_188142.1| unknown protein; protein id: At3g15240.1 [Arabi... 54 2e-06
gb|EAA13866.1| agCP8583 [Anopheles gambiae str. PEST] 39 0.038
>ref|NP_200201.2| putative protein; protein id: At5g53900.1, supported by cDNA:
gi_18252212 [Arabidopsis thaliana]
gi|18252213|gb|AAL61939.1| putative protein [Arabidopsis
thaliana] gi|21387111|gb|AAM47959.1| putative protein
[Arabidopsis thaliana]
Length = 265
Score = 74.3 bits (181), Expect = 1e-12
Identities = 53/125 (42%), Positives = 69/125 (54%), Gaps = 5/125 (4%)
Frame = -3
Query: 589 NGLSFFNALTGRTDDA-KLLFNPESLGSKLGDQNHNHHHSLDQHPNSSNMMQNSGEANPN 413
NGLS FNALTGR D+A +LLFN E N N+ N N
Sbjct: 171 NGLSLFNALTGRADEASRLLFNQEQ--------------------NPMNV------ENQN 204
Query: 412 DFLSLDSHSEGARKMDKFKRSFTLPARVASSSSSTSMEHHHHHQQQGVEYRN----SEGG 245
+FL+L+ H +KF+RS+TLPAR+ SSSSSTS++ QQQ +E+RN S G
Sbjct: 205 EFLNLEGHHP-----NKFRRSYTLPARMDSSSSSTSLD-----QQQPLEFRNNNSGSNSG 254
Query: 244 MYPDV 230
++PDV
Sbjct: 255 LFPDV 259
>dbj|BAB10720.1| gb|AAF34833.1~gene_id:K19P17.6~similar to unknown protein
[Arabidopsis thaliana]
Length = 377
Score = 74.3 bits (181), Expect = 1e-12
Identities = 53/125 (42%), Positives = 69/125 (54%), Gaps = 5/125 (4%)
Frame = -3
Query: 589 NGLSFFNALTGRTDDA-KLLFNPESLGSKLGDQNHNHHHSLDQHPNSSNMMQNSGEANPN 413
NGLS FNALTGR D+A +LLFN E N N+ N N
Sbjct: 283 NGLSLFNALTGRADEASRLLFNQEQ--------------------NPMNV------ENQN 316
Query: 412 DFLSLDSHSEGARKMDKFKRSFTLPARVASSSSSTSMEHHHHHQQQGVEYRN----SEGG 245
+FL+L+ H +KF+RS+TLPAR+ SSSSSTS++ QQQ +E+RN S G
Sbjct: 317 EFLNLEGHHP-----NKFRRSYTLPARMDSSSSSTSLD-----QQQPLEFRNNNSGSNSG 366
Query: 244 MYPDV 230
++PDV
Sbjct: 367 LFPDV 371
>dbj|BAC24922.1| OJ1606_D04.10 [Oryza sativa (japonica cultivar-group)]
Length = 341
Score = 60.8 bits (146), Expect = 1e-08
Identities = 39/94 (41%), Positives = 54/94 (56%)
Frame = -3
Query: 589 NGLSFFNALTGRTDDAKLLFNPESLGSKLGDQNHNHHHSLDQHPNSSNMMQNSGEANPND 410
NGLSFF ALT RT+D KLLF G+ G + + ++ + + G N +
Sbjct: 56 NGLSFFTALTARTEDVKLLFGDGGGGADDGSK-------MAAAAAAAQDVGHGGVENVEE 108
Query: 409 FLSLDSHSEGARKMDKFKRSFTLPARVASSSSST 308
+LSL+S KFKRSFTLPAR++SS++ST
Sbjct: 109 YLSLES--------TKFKRSFTLPARMSSSTTST 134
>ref|NP_188142.1| unknown protein; protein id: At3g15240.1 [Arabidopsis thaliana]
gi|9294251|dbj|BAB02153.1|
gb|AAF34833.1~gene_id:K7L4.4~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 251
Score = 53.5 bits (127), Expect = 2e-06
Identities = 31/66 (46%), Positives = 38/66 (56%)
Frame = -3
Query: 586 GLSFFNALTGRTDDAKLLFNPESLGSKLGDQNHNHHHSLDQHPNSSNMMQNSGEANPNDF 407
GLSFFNALT + AKLLF+ E LG K QN + S + +ANP++F
Sbjct: 190 GLSFFNALTNNVN-AKLLFDSEGLGDKTDHQNQSQEQS-----------NSESQANPSEF 237
Query: 406 LSLDSH 389
LSLDSH
Sbjct: 238 LSLDSH 243
>gb|EAA13866.1| agCP8583 [Anopheles gambiae str. PEST]
Length = 1889
Score = 39.3 bits (90), Expect = 0.038
Identities = 26/95 (27%), Positives = 42/95 (43%), Gaps = 6/95 (6%)
Frame = -3
Query: 511 SKLGDQNHNHHHSLDQHPNSSNMMQNSGEANPNDFLSLDSHSEGARKMDKFKRSFTLPAR 332
S G ++H L ++S+ +S ++PN ++ G+ +D+ + T P
Sbjct: 1419 SSSGSKHHKDRRKLSTASSTSSASSSSVASSPN--IATAGSGSGSNIVDEPDDAPTTPTV 1476
Query: 331 VASS------SSSTSMEHHHHHQQQGVEYRNSEGG 245
ASS S S S HHHHH + +S GG
Sbjct: 1477 TASSKHSSKSSKSNSHSHHHHHDHERNHVASSAGG 1511
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,489,572
Number of Sequences: 1393205
Number of extensions: 11279335
Number of successful extensions: 49622
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 37635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46002
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
