Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001921A_C01 KMC001921A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196946.1| putative protein; protein id: At5g14420.1, supp... 114 4e-25
ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabi... 92 2e-18
ref|NP_564907.1| F12A21.7; protein id: At1g67800.1, supported by... 74 1e-12
dbj|BAB92575.1| P0497A05.19 [Oryza sativa (japonica cultivar-gro... 73 4e-12
ref|NP_565206.1| expressed protein; protein id: At1g79380.1, sup... 68 9e-11
>ref|NP_196946.1| putative protein; protein id: At5g14420.1, supported by cDNA:
gi_20466261 [Arabidopsis thaliana]
gi|11357547|pir||T48615 hypothetical protein F18O22.210
- Arabidopsis thaliana gi|7573467|emb|CAB87781.1|
putative protein [Arabidopsis thaliana]
gi|20466262|gb|AAM20448.1| putative protein [Arabidopsis
thaliana] gi|23198082|gb|AAN15568.1| putative protein
[Arabidopsis thaliana]
Length = 468
Score = 114 bits (285), Expect(2) = 4e-25
Identities = 53/83 (63%), Positives = 60/83 (71%), Gaps = 2/83 (2%)
Frame = -1
Query: 565 GSESFGTSKPSHATSFEPSVPSFNDHSSVVGTAP--PAPSSAYDNQLCPICLTNSKDMAF 392
GS S+ + KPS SF+PSVP V ++P P SSA DNQLCPICL+N KDMAF
Sbjct: 378 GSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPKDMAF 437
Query: 391 GCGHQTCCECGQDLQSCPICRSP 323
GCGHQTCCECG DLQ CPICR+P
Sbjct: 438 GCGHQTCCECGPDLQMCPICRAP 460
Score = 22.3 bits (46), Expect(2) = 4e-25
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 339 PSVGAPVNTRIKLY 298
P AP+ TRIKLY
Sbjct: 455 PICRAPIQTRIKLY 468
>ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabidopsis thaliana]
gi|6016736|gb|AAF01562.1|AC009325_32 unknown protein
[Arabidopsis thaliana]
Length = 489
Score = 92.0 bits (227), Expect(2) = 2e-18
Identities = 44/79 (55%), Positives = 53/79 (66%)
Frame = -1
Query: 559 ESFGTSKPSHATSFEPSVPSFNDHSSVVGTAPPAPSSAYDNQLCPICLTNSKDMAFGCGH 380
+S + S +FEPSVP + S + SSA D QLCPICL+N K+MAFGCGH
Sbjct: 410 QSGSSFSSSRIPNFEPSVPPYPFESKQM-------SSADDIQLCPICLSNPKNMAFGCGH 462
Query: 379 QTCCECGQDLQSCPICRSP 323
QTCCECG DL+ CPICR+P
Sbjct: 463 QTCCECGPDLKVCPICRAP 481
Score = 22.3 bits (46), Expect(2) = 2e-18
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 339 PSVGAPVNTRIKLY 298
P AP+ TRIKLY
Sbjct: 476 PICRAPIQTRIKLY 489
>ref|NP_564907.1| F12A21.7; protein id: At1g67800.1, supported by cDNA: 34552.
[Arabidopsis thaliana] gi|21592955|gb|AAM64905.1|
unknown [Arabidopsis thaliana]
Length = 433
Score = 74.3 bits (181), Expect = 1e-12
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -1
Query: 580 PSKPFGSESFGTS-KPSHATSFEPSVPSFNDHSSVVGTAPPAPSSAYDNQLCPICLTNSK 404
P + ++S S + S +TSF+ + P N SS T P + Q CP+CL ++K
Sbjct: 343 PPPTYATQSMRNSPRTSRSTSFQ-NKPYDNGVSS---TPPSTTHNESQQQFCPVCLVSAK 398
Query: 403 DMAFGCGHQTCCECGQDLQSCPICRS 326
+MAF CGHQTC CG+DL CPICRS
Sbjct: 399 NMAFNCGHQTCAGCGEDLHVCPICRS 424
>dbj|BAB92575.1| P0497A05.19 [Oryza sativa (japonica cultivar-group)]
gi|20804929|dbj|BAB92608.1| P0456E05.7 [Oryza sativa
(japonica cultivar-group)]
Length = 495
Score = 72.8 bits (177), Expect = 4e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = -1
Query: 568 FGSESFGTSKPSHATSFEPSVPSFNDHSSVVGTAPPAPSSAYDNQLCPICLTNSKDMAFG 389
+GS+SF SKPS S S+ + + ++P PSS YDNQ+CPICL N KDMAFG
Sbjct: 388 YGSKSF--SKPSTYPQSSTSSSSYPHYETAQSSSPAVPSSTYDNQVCPICLVNPKDMAFG 445
Query: 388 CGHQTCCEC 362
CGHQ C C
Sbjct: 446 CGHQ-CNPC 453
>ref|NP_565206.1| expressed protein; protein id: At1g79380.1, supported by cDNA:
gi_13937148 [Arabidopsis thaliana]
gi|25406578|pir||G96824 hypothetical protein T8K14.20
[imported] - Arabidopsis thaliana
gi|4835771|gb|AAD30238.1|AC007202_20 Similar to
gi|3844599 F31D5.2 gene product from Caenorhabditis
elegans cosmid gb|U28941 and contains PF|00097 Zinc
(Ring) finger C3HC4 domain. ESTs gb|F19963 and
gb|T42582 come from this gene. [Arabidopsis thaliana]
gi|13937149|gb|AAK50068.1|AF372928_1 At1g79380/T8K14_20
[Arabidopsis thaliana] gi|22137140|gb|AAM91415.1|
At1g79380/T8K14_20 [Arabidopsis thaliana]
Length = 401
Score = 68.2 bits (165), Expect = 9e-11
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = -1
Query: 460 APSSAYDNQLCPICLTNSKDMAFGCGHQTCCECGQDLQSCPICR 329
+P+S Q CPICLTN KD+AF CGH TC +CG + +CPICR
Sbjct: 347 SPASPEQTQSCPICLTNRKDVAFSCGHMTCGDCGSKISNCPICR 390
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,763,967
Number of Sequences: 1393205
Number of extensions: 12314505
Number of successful extensions: 32733
Number of sequences better than 10.0: 398
Number of HSP's better than 10.0 without gapping: 30556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32542
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
