Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001919A_C01 KMC001919A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182107.1| unknown protein; protein id: At2g45830.1 [Arabi... 78 3e-22
ref|NP_190467.1| putative protein; protein id: At3g48980.1 [Arab... 91 9e-18
pir||A96660 protein F2K11.20 [imported] - Arabidopsis thaliana g... 80 2e-14
gb|AAK50079.1|AF372939_1 At1g63420/F2K11_19 [Arabidopsis thalian... 80 2e-14
ref|NP_176531.1| hypothetical protein; protein id: At1g63420.1 [... 80 2e-14
>ref|NP_182107.1| unknown protein; protein id: At2g45830.1 [Arabidopsis thaliana]
gi|7486461|pir||T02464 hypothetical protein At2g45830
[imported] - Arabidopsis thaliana
gi|3386611|gb|AAC28541.1| unknown protein [Arabidopsis
thaliana]
Length = 517
Score = 78.2 bits (191), Expect(2) = 3e-22
Identities = 34/60 (56%), Positives = 45/60 (74%)
Frame = -3
Query: 551 IGNAASNFIQEELKMDYVYDYMFHLLNEYARLLKFEPKVPEGAVELCAESMASAREMGWR 372
IG S FI+EE+KM+YVYDYMFHL+NEYA+LLKF+P++P GA E+ + M + WR
Sbjct: 399 IGEEGSRFIREEVKMEYVYDYMFHLMNEYAKLLKFKPEIPWGATEITPDIMGCSATGRWR 458
Score = 48.1 bits (113), Expect(2) = 3e-22
Identities = 22/49 (44%), Positives = 29/49 (58%)
Frame = -2
Query: 393 CERNGLEKKFMAESMVQEPSTKAPCSLPPPFDPHWLRIFNGNKLNLIRR 247
C G + FM ESMV PS ++PC +P PF+PH L+ K NL R+
Sbjct: 451 CSATGRWRDFMEESMVMFPSEESPCEMPSPFNPHDLKEILERKTNLTRQ 499
>ref|NP_190467.1| putative protein; protein id: At3g48980.1 [Arabidopsis thaliana]
gi|11281902|pir||T46132 hypothetical protein T2J13.180 -
Arabidopsis thaliana gi|6522568|emb|CAB62012.1| putative
protein [Arabidopsis thaliana]
Length = 539
Score = 90.9 bits (224), Expect = 9e-18
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = -3
Query: 551 IGNAASNFIQEELKMDYVYDYMFHLLNEYARLLKFEPKVPEGAVELCAESMASAREMGWR 372
IG AS F+Q+ELKMDYVYDYMFHLL +Y++LL+F+P++P+ + ELC+E+MA R+ R
Sbjct: 422 IGKKASEFVQQELKMDYVYDYMFHLLIQYSKLLRFKPEIPQNSTELCSEAMACPRDGNER 481
Query: 371 RSLWRNPWFRSLQQKLLAHCLLHLTHTGSGF--LMATNSI*SGDVERWEDTYWKKKTE 204
+ + + R + C + + + F ++ + +E+WE YW+K+ +
Sbjct: 482 KFMMESLVKRPAE---TGPCAMPPPYDPASFYSVLKRRQSTTSRIEQWESKYWRKQNK 536
>pir||A96660 protein F2K11.20 [imported] - Arabidopsis thaliana
gi|6633846|gb|AAF19705.1|AC008047_12 F2K11.20
[Arabidopsis thaliana]
Length = 605
Score = 79.7 bits (195), Expect = 2e-14
Identities = 48/119 (40%), Positives = 67/119 (55%), Gaps = 6/119 (5%)
Frame = -3
Query: 551 IGNAASNFIQEELKMDYVYDYMFHLLNEYARLLKFEPKVPEGAVELCAESMASAREMGWR 372
IG AS F+Q +L M+ VYDYMFHLLNEY++LLK++P+VP+ +VELC E++ E
Sbjct: 487 IGREASEFMQRDLSMENVYDYMFHLLNEYSKLLKYKPQVPKNSVELCTEALVCPSEGEDV 546
Query: 371 RSLWRNPWFRSLQQKLLAH--CLLHLTHTGSGF----LMATNSI*SGDVERWEDTYWKK 213
+ + SL + A C L +G N I VE+WED+YW+K
Sbjct: 547 NGVDKKFMIGSLVSRPHASGPCSLPPPFDSNGLEKFHRKKLNLI--RQVEKWEDSYWQK 603
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 384 NGLEKKFMAESMVQEPSTKAPCSLPPPFDPHWLRIFNGNKLNLIRR 247
NG++KKFM S+V P PCSLPPPFD + L F+ KLNLIR+
Sbjct: 547 NGVDKKFMIGSLVSRPHASGPCSLPPPFDSNGLEKFHRKKLNLIRQ 592
>gb|AAK50079.1|AF372939_1 At1g63420/F2K11_19 [Arabidopsis thaliana]
gi|21700873|gb|AAM70560.1| At1g63420/F2K11_19
[Arabidopsis thaliana]
Length = 228
Score = 79.7 bits (195), Expect = 2e-14
Identities = 48/119 (40%), Positives = 67/119 (55%), Gaps = 6/119 (5%)
Frame = -3
Query: 551 IGNAASNFIQEELKMDYVYDYMFHLLNEYARLLKFEPKVPEGAVELCAESMASAREMGWR 372
IG AS F+Q +L M+ VYDYMFHLLNEY++LLK++P+VP+ +VELC E++ E
Sbjct: 110 IGREASEFMQRDLSMENVYDYMFHLLNEYSKLLKYKPQVPKNSVELCTEALVCPSEGEDV 169
Query: 371 RSLWRNPWFRSLQQKLLAH--CLLHLTHTGSGF----LMATNSI*SGDVERWEDTYWKK 213
+ + SL + A C L +G N I VE+WED+YW+K
Sbjct: 170 NGVDKKFMIGSLVSRPHASGPCSLPPPFDSNGLEKFHRKKLNLI--RQVEKWEDSYWQK 226
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 384 NGLEKKFMAESMVQEPSTKAPCSLPPPFDPHWLRIFNGNKLNLIRR 247
NG++KKFM S+V P PCSLPPPFD + L F+ KLNLIR+
Sbjct: 170 NGVDKKFMIGSLVSRPHASGPCSLPPPFDSNGLEKFHRKKLNLIRQ 215
>ref|NP_176531.1| hypothetical protein; protein id: At1g63420.1 [Arabidopsis
thaliana]
Length = 578
Score = 79.7 bits (195), Expect = 2e-14
Identities = 48/119 (40%), Positives = 67/119 (55%), Gaps = 6/119 (5%)
Frame = -3
Query: 551 IGNAASNFIQEELKMDYVYDYMFHLLNEYARLLKFEPKVPEGAVELCAESMASAREMGWR 372
IG AS F+Q +L M+ VYDYMFHLLNEY++LLK++P+VP+ +VELC E++ E
Sbjct: 460 IGREASEFMQRDLSMENVYDYMFHLLNEYSKLLKYKPQVPKNSVELCTEALVCPSEGEDV 519
Query: 371 RSLWRNPWFRSLQQKLLAH--CLLHLTHTGSGF----LMATNSI*SGDVERWEDTYWKK 213
+ + SL + A C L +G N I VE+WED+YW+K
Sbjct: 520 NGVDKKFMIGSLVSRPHASGPCSLPPPFDSNGLEKFHRKKLNLI--RQVEKWEDSYWQK 576
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -2
Query: 384 NGLEKKFMAESMVQEPSTKAPCSLPPPFDPHWLRIFNGNKLNLIRR 247
NG++KKFM S+V P PCSLPPPFD + L F+ KLNLIR+
Sbjct: 520 NGVDKKFMIGSLVSRPHASGPCSLPPPFDSNGLEKFHRKKLNLIRQ 565
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,444,713
Number of Sequences: 1393205
Number of extensions: 10058722
Number of successful extensions: 26953
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26943
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
