Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001917A_C01 KMC001917A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567837.1| expressed protein; protein id: At4g29960.1, sup... 74 1e-12
ref|NP_463560.1| similar to PTS system, beta-glucosides specific... 33 2.3
pir||T48711 hypothetical protein 1A9.150 [imported] - Neurospora... 33 3.0
emb|CAD70370.1| related to TPR-containing protein Mql1 [Neurospo... 32 6.6
ref|NP_147924.1| hypothetical protein [Aeropyrum pernix] gi|7516... 32 8.6
>ref|NP_567837.1| expressed protein; protein id: At4g29960.1, supported by cDNA:
117732., supported by cDNA: gi_20466465 [Arabidopsis
thaliana] gi|7486227|pir||T08557 hypothetical protein
F27B13.200 - Arabidopsis thaliana
gi|4914420|emb|CAB43671.1| hypothetical protein
[Arabidopsis thaliana] gi|7269895|emb|CAB79754.1|
hypothetical protein [Arabidopsis thaliana]
gi|20466466|gb|AAM20550.1| unknown protein [Arabidopsis
thaliana] gi|21537007|gb|AAM61348.1| unknown
[Arabidopsis thaliana] gi|22136434|gb|AAM91295.1|
unknown protein [Arabidopsis thaliana]
Length = 291
Score = 74.3 bits (181), Expect = 1e-12
Identities = 38/56 (67%), Positives = 44/56 (77%)
Frame = -2
Query: 613 AENGNQPPNDADQAIGNENVGEPGRGHGGNQWWGIVKEIQMIVFGFITSLLPGFHN 446
A+NGN+ +A++ NENV G+ GNQWWGIVKEIQMIVFGFITSLLPGFHN
Sbjct: 240 ADNGNRARANANE---NENVDA---GNQGNQWWGIVKEIQMIVFGFITSLLPGFHN 289
>ref|NP_463560.1| similar to PTS system, beta-glucosides specific enzyme IIABC
[Listeria monocytogenes EGD-e] gi|25287904|pir||AD1078
PTS system, beta-glucosides specific enzyme IIABC
homolog lmo0027 [imported] - Listeria monocytogenes
(strain EGD-e) gi|16409386|emb|CAC98242.1| similar to
PTS system, beta-glucosides specific enzyme IIABC
[Listeria monocytogenes]
Length = 634
Score = 33.5 bits (75), Expect = 2.3
Identities = 14/44 (31%), Positives = 22/44 (49%)
Frame = -2
Query: 568 GNENVGEPGRGHGGNQWWGIVKEIQMIVFGFITSLLPGFHNHMD 437
G N +PG G G WW ++ + + GFI + + GF + D
Sbjct: 425 GLPNFFKPGSGISGEFWWVVIAIVISFILGFILTYVVGFKDPAD 468
>pir||T48711 hypothetical protein 1A9.150 [imported] - Neurospora crassa
gi|28923189|gb|EAA32405.1| hypothetical protein (
hypothetical protein 1A9.150 [imported] - Neurospora
crassa )
Length = 178
Score = 33.1 bits (74), Expect = 3.0
Identities = 20/63 (31%), Positives = 26/63 (40%), Gaps = 7/63 (11%)
Frame = +3
Query: 435 QSIWLWNP-------GRREVINPKTIIWISFTIPHHWFPPWPLPGSPTFSFPIAWSASLG 593
Q +WL+ GR + IN T T+ + W P SP I+WSA G
Sbjct: 103 QKLWLFTSPVIDDQVGRAQAINRNTCTGSGETVENRWLSVGPAVWSPVHGLWISWSA--G 160
Query: 594 GWF 602
WF
Sbjct: 161 RWF 163
>emb|CAD70370.1| related to TPR-containing protein Mql1 [Neurospora crassa]
gi|28924992|gb|EAA34080.1| hypothetical protein
[Neurospora crassa]
Length = 917
Score = 32.0 bits (71), Expect = 6.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 616 AAENGNQPPNDADQAIGNENVGEPGRGHGGNQWWGIVKEI 497
A QPP+ Q + N G PG G G N W G + +I
Sbjct: 445 AGSGSGQPPHQPPQPMHN---GGPGPGQGANSWGGRISDI 481
>ref|NP_147924.1| hypothetical protein [Aeropyrum pernix] gi|7516481|pir||F72618
hypothetical protein APE1407 - Aeropyrum pernix (strain
K1) gi|5105090|dbj|BAA80404.1| 265aa long hypothetical
protein [Aeropyrum pernix]
Length = 265
Score = 31.6 bits (70), Expect = 8.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 293 CHFCIFTWIVDTTVFVASRAQGNIFYNIGVLVFSSFLVSVYDCN 162
CH C FTW+V + V R + +G+ S + + C+
Sbjct: 175 CHMCFFTWLVSRGIPVCPRCGSTVPLEVGIFTDKSRRIGLGFCS 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,065,608
Number of Sequences: 1393205
Number of extensions: 14152380
Number of successful extensions: 36215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36198
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
