Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001915A_C02 KMC001915A_c02
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568870.1| SKP1 interacting partner 1 (SKIP1); protein id:... 118 8e-26
ref|NP_567849.1| F-box protein family, AtFBL19; protein id: At4g... 74 2e-12
ref|NP_200061.1| nodulin-like protein; protein id: At5g52480.1 [... 49 8e-05
ref|NP_567297.1| F-box protein family, AtFBL9/AtFBL23; protein i... 48 1e-04
emb|CAD40865.1| OSJNBa0064H22.10 [Oryza sativa (japonica cultiva... 47 3e-04
>ref|NP_568870.1| SKP1 interacting partner 1 (SKIP1); protein id: At5g57900.1,
supported by cDNA: 43069., supported by cDNA:
gi_10716946 [Arabidopsis thaliana]
gi|9758359|dbj|BAB08860.1| contains similarity to
N7-like protein~gene_id:MTI20.16 [Arabidopsis thaliana]
gi|10716947|gb|AAG21976.1| SKP1 interacting partner 1
[Arabidopsis thaliana]
Length = 300
Score = 118 bits (295), Expect = 8e-26
Identities = 59/101 (58%), Positives = 73/101 (71%), Gaps = 2/101 (1%)
Frame = -2
Query: 652 AAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLA 473
A AI + M +LE LEI+FS+LS KGL IC+ CP LE+LDL GC +L+SRDI + S L
Sbjct: 200 ADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVHLSSRDITSNVSRLK 259
Query: 472 HLKDIKKPNFYIPRS--VFHTERYGHWQLYDERFQTDVFRI 356
LK++KKP+ Y+PRS V TERYGHW+LYDERF RI
Sbjct: 260 WLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300
>ref|NP_567849.1| F-box protein family, AtFBL19; protein id: At4g30640.1 [Arabidopsis
thaliana] gi|25376522|pir||E85358 hypothetical protein
AT4g30640 [imported] - Arabidopsis thaliana
gi|7269965|emb|CAB79782.1| putative protein [Arabidopsis
thaliana]
Length = 301
Score = 73.6 bits (179), Expect = 2e-12
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = -2
Query: 652 AAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLA 473
A I + M L+ LEIR+S L+A+GL+ +C+ C NLE++DL GC +LT DI +S L
Sbjct: 214 ARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSDINTNTSGLK 273
Query: 472 HLKDIKKPNFYIPRSVFHTERYGH 401
+L +I KP+F P +V R G+
Sbjct: 274 NLTEIIKPDFNPPIAVLRVPRPGN 297
Score = 36.6 bits (83), Expect = 0.30
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 610 EIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDI 458
EIR + + L+ +RCPNLE L + C N+T + + + +L+++
Sbjct: 105 EIRIRHCTERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLREL 155
>ref|NP_200061.1| nodulin-like protein; protein id: At5g52480.1 [Arabidopsis
thaliana] gi|10177414|dbj|BAB10545.1| nodulin-like
protein [Arabidopsis thaliana]
Length = 241
Score = 48.5 bits (114), Expect = 8e-05
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = -2
Query: 652 AAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLA 473
A AIA SMP L L++ +KL+ GLN I CP+LE LDL C NL
Sbjct: 124 AIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQCINLVGN---LEKRCFE 180
Query: 472 HLKDIKKPN 446
+KD+++ N
Sbjct: 181 KIKDLRRHN 189
>ref|NP_567297.1| F-box protein family, AtFBL9/AtFBL23; protein id: At4g05500.1
[Arabidopsis thaliana] gi|25407343|pir||B85069
hypothetical protein AT4g05500 [imported] - Arabidopsis
thaliana gi|5732066|gb|AAD48965.1|AF147263_7 contains
similarity to Medicago truncatula N7 protein (GB:Y17613)
[Arabidopsis thaliana] gi|7267310|emb|CAB81092.1|
contains similarity to Medicago truncatula N7 protein
(GB:Y17613)~similarity to~contains EST gb:AI998328.1
[Arabidopsis thaliana]
Length = 449
Score = 47.8 bits (112), Expect = 1e-04
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -2
Query: 652 AAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLT-SRDIANASSSL 476
A AIA SMP L L++ + L+ KGLN I CP+LE LDL C N+ D+
Sbjct: 352 AKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDL--KKRCF 409
Query: 475 AHLKDIKKPN 446
+KD++ PN
Sbjct: 410 ERIKDLRCPN 419
Score = 32.0 bits (71), Expect = 7.5
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 646 AIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLT-SRDIANASSSLAH 470
AIA +MP L L++ + L+ L I C +L LDL C N+ D+ S
Sbjct: 24 AIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRCSE--R 81
Query: 469 LKDIKKPN 446
++D+++P+
Sbjct: 82 IRDLRRPD 89
Score = 31.6 bits (70), Expect = 9.8
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = -2
Query: 649 AAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANL---------TSRDI 497
A +P LE+LE+ + S + L I + CPNL+ L L+ + ++ I
Sbjct: 296 AKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAI 355
Query: 496 ANASSSLAHLK 464
A + L HL+
Sbjct: 356 AESMPELRHLQ 366
>emb|CAD40865.1| OSJNBa0064H22.10 [Oryza sativa (japonica cultivar-group)]
Length = 413
Score = 46.6 bits (109), Expect = 3e-04
Identities = 23/47 (48%), Positives = 29/47 (60%)
Frame = -2
Query: 652 AAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANL 512
A AIA +MP LE LE+ + S GL I RCP L+ LD+ GC N+
Sbjct: 322 ALAIANTMPVLEHLELAYGLFSDTGLGAILTRCPRLQTLDILGCWNV 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,306,837
Number of Sequences: 1393205
Number of extensions: 10685530
Number of successful extensions: 28426
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 26807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28380
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
