KMC001914A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001914A_C01 KMC001914A_c01
acttCAGCTGAGAAAATTCAAGAATTCATTAATAGTATGGTTGAGCCACAAATCTCTATA
CACATTGAATTGACTTATATTACATATACTCATGACTAACATTACAATCTTATTCCCTAA
TGTGACTATCACAATAAACCATAGCCAAAAGAATTACAAAATCACAGTACATAACAACAG
TTTCAGTATCATCTCACAAAACAGAACTGCTAGAAAAAAGTTGTTCCAGCACGGCCACGA
TGCAACAAATCATGTGCCATGTGATCCCTAGCCTGCTCTGCAGAAACAGAGCGCACACCA
TTCTCCGCCACCATCTCATCATCAAAAACATCAAACTTCCAATCAGGATCCACCTTCTCA
TTATTCATCTCACAAATATTATGCAAAACACAACAAGCACCAAGAACTCCAGGCAAATCC
TCAAGCTTCCCCTCAGTCCTCTTCTGCAAGCAAGACCACCTCCCTTTCAACCTGCCAAAT
GCATCCTTAGCAAGCCCCTGAATCTCATCAACTTTCTCGTTAAACGCGTGCTGCGTCCAG
GTAAGATTCTGGTGAGTATAAGGAACCAgaaccccttccattagagggtgcctgagtttc
ccacaacccaacatccttcaacttcccctgcttgctctctgaaacaga
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001914A_C01 KMC001914A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196762.1| putative protein; protein id: At5g12010.1, supp... 195 4e-49
dbj|BAC05572.1| B1097D05.23 [Oryza sativa (japonica cultivar-gro... 186 2e-46
gb|AAO22738.1| unknown protein [Arabidopsis thaliana] gi|2897363... 185 5e-46
gb|AAM64474.1| unknown [Arabidopsis thaliana] 185 5e-46
ref|NP_567834.1| expressed protein; protein id: At4g29780.1, sup... 185 5e-46
>ref|NP_196762.1| putative protein; protein id: At5g12010.1, supported by cDNA:
gi_16604351 [Arabidopsis thaliana]
gi|11280502|pir||T48560 hypothetical protein F14F18.180
- Arabidopsis thaliana gi|7573368|emb|CAB87674.1|
putative protein [Arabidopsis thaliana]
gi|16604352|gb|AAL24182.1| AT5g12010/F14F18_180
[Arabidopsis thaliana] gi|25141199|gb|AAN73294.1|
At5g12010/F14F18_180 [Arabidopsis thaliana]
Length = 502
Score = 195 bits (496), Expect = 4e-49
Identities = 94/146 (64%), Positives = 117/146 (79%), Gaps = 2/146 (1%)
Frame = -2
Query: 647 LFQRASRGS*R--MLGCGKLRHPLMEGVLVPYTHQNLTWTQHAFNEKVDEIQGLAKDAFG 474
L+QRA+ G M G HPL++ VLVPYT QNLTWTQHAFNEK+ E+QG+AK+AFG
Sbjct: 356 LYQRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNLTWTQHAFNEKMSEVQGVAKEAFG 415
Query: 473 RLKGRWSCLQKRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGV 294
RLKGRW+CLQKRTE KL+DLP VLGACCVLHNICEM EK++P+ +V DDE++ EN +
Sbjct: 416 RLKGRWACLQKRTEVKLQDLPTVLGACCVLHNICEMREEKMEPELMVEVIDDEVLPENVL 475
Query: 293 RSVSAEQARDHMAHDLLHRGRAGTTF 216
RSV+A +ARD ++H+LLH G AGT+F
Sbjct: 476 RSVNAMKARDTISHNLLHHGLAGTSF 501
>dbj|BAC05572.1| B1097D05.23 [Oryza sativa (japonica cultivar-group)]
Length = 551
Score = 186 bits (472), Expect = 2e-46
Identities = 92/147 (62%), Positives = 114/147 (76%), Gaps = 2/147 (1%)
Frame = -2
Query: 647 LFQRASRGS*RMLGC--GKLRHPLMEGVLVPYTHQNLTWTQHAFNEKVDEIQGLAKDAFG 474
L QRA+ G C G +PLM+ VLVPYTHQNLTWTQHAFNEKV +++ +A DAF
Sbjct: 406 LHQRAAAGMMHS-ACLVGGASYPLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFA 464
Query: 473 RLKGRWSCLQKRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGV 294
RLK RW+CLQKRTE KL+DLP VLGACCVLHNICE E+++P+ +F++ DDE E V
Sbjct: 465 RLKARWACLQKRTEVKLQDLPVVLGACCVLHNICETRGEELEPELRFELVDDETSPETPV 524
Query: 293 RSVSAEQARDHMAHDLLHRGRAGTTFF 213
RS +A++ARD++AH+LLHRG AGTTFF
Sbjct: 525 RSEAAKRARDNIAHNLLHRGFAGTTFF 551
>gb|AAO22738.1| unknown protein [Arabidopsis thaliana] gi|28973634|gb|AAO64139.1|
unknown protein [Arabidopsis thaliana]
Length = 540
Score = 185 bits (469), Expect = 5e-46
Identities = 92/141 (65%), Positives = 107/141 (75%), Gaps = 1/141 (0%)
Frame = -2
Query: 641 QRASRGS*RMLGC-GKLRHPLMEGVLVPYTHQNLTWTQHAFNEKVDEIQGLAKDAFGRLK 465
QRA+RG R G PL + +LVPYT QNLTWTQHAFNE + EIQG+A AF RLK
Sbjct: 397 QRAARGMLRDSWIVGNSGFPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLK 456
Query: 464 GRWSCLQKRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGVRSV 285
GRW+CLQKRTE KL+DLP VLGACCVLHNICEM E++ P+ KF+VFDD V EN +RS
Sbjct: 457 GRWACLQKRTEVKLQDLPYVLGACCVLHNICEMRKEEMLPELKFEVFDDVAVPENNIRSA 516
Query: 284 SAEQARDHMAHDLLHRGRAGT 222
SA RDH++H+LLHRG AGT
Sbjct: 517 SAVNTRDHISHNLLHRGLAGT 537
>gb|AAM64474.1| unknown [Arabidopsis thaliana]
Length = 515
Score = 185 bits (469), Expect = 5e-46
Identities = 92/141 (65%), Positives = 107/141 (75%), Gaps = 1/141 (0%)
Frame = -2
Query: 641 QRASRGS*RMLGC-GKLRHPLMEGVLVPYTHQNLTWTQHAFNEKVDEIQGLAKDAFGRLK 465
QRA+RG R G PL + +LVPYT QNLTWTQHAFNE + EIQG+A AF RLK
Sbjct: 372 QRAARGMLRDSWIVGNSGFPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLK 431
Query: 464 GRWSCLQKRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGVRSV 285
GRW+CLQKRTE KL+DLP VLGACCVLHNICEM E++ P+ KF+VFDD V EN +RS
Sbjct: 432 GRWACLQKRTEVKLQDLPYVLGACCVLHNICEMRKEEMLPELKFEVFDDVAVPENNIRSA 491
Query: 284 SAEQARDHMAHDLLHRGRAGT 222
SA RDH++H+LLHRG AGT
Sbjct: 492 SAVNTRDHISHNLLHRGLAGT 512
>ref|NP_567834.1| expressed protein; protein id: At4g29780.1, supported by cDNA:
249769. [Arabidopsis thaliana] gi|7452044|pir||T08539
hypothetical protein F27B13.20 - Arabidopsis thaliana
gi|4914402|emb|CAB43653.1| hypothetical protein
[Arabidopsis thaliana] gi|7269877|emb|CAB79736.1|
hypothetical protein [Arabidopsis thaliana]
Length = 515
Score = 185 bits (469), Expect = 5e-46
Identities = 92/141 (65%), Positives = 107/141 (75%), Gaps = 1/141 (0%)
Frame = -2
Query: 641 QRASRGS*RMLGC-GKLRHPLMEGVLVPYTHQNLTWTQHAFNEKVDEIQGLAKDAFGRLK 465
QRA+RG R G PL + +LVPYT QNLTWTQHAFNE + EIQG+A AF RLK
Sbjct: 372 QRAARGMLRDSWIVGNSGFPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLK 431
Query: 464 GRWSCLQKRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGVRSV 285
GRW+CLQKRTE KL+DLP VLGACCVLHNICEM E++ P+ KF+VFDD V EN +RS
Sbjct: 432 GRWACLQKRTEVKLQDLPYVLGACCVLHNICEMRKEEMLPELKFEVFDDVAVPENNIRSA 491
Query: 284 SAEQARDHMAHDLLHRGRAGT 222
SA RDH++H+LLHRG AGT
Sbjct: 492 SAVNTRDHISHNLLHRGLAGT 512
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,096,609
Number of Sequences: 1393205
Number of extensions: 12602019
Number of successful extensions: 52882
Number of sequences better than 10.0: 396
Number of HSP's better than 10.0 without gapping: 44663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50918
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
|
|
clone |
accession |
position |
| 1 |
MR039a12_f |
BP078992 |
1 |
96 |
| 2 |
GNf061c01 |
BP071887 |
5 |
427 |
| 3 |
GNf048c06 |
BP070901 |
5 |
410 |
| 4 |
GENf024e01 |
BP059358 |
5 |
383 |
| 5 |
MR021b09_f |
BP077577 |
5 |
383 |
| 6 |
MR013b05_f |
BP076925 |
5 |
490 |
| 7 |
GNf053d06 |
BP071311 |
5 |
431 |
| 8 |
MR027g11_f |
BP078108 |
5 |
419 |
| 9 |
MR022g08_f |
BP077704 |
5 |
417 |
| 10 |
MR062d07_f |
BP080748 |
5 |
416 |
| 11 |
MR013a01_f |
BP076912 |
5 |
387 |
| 12 |
MR010g07_f |
BP076732 |
5 |
408 |
| 13 |
MFB003d02_f |
BP034106 |
5 |
519 |
| 14 |
MR022h08_f |
BP077714 |
7 |
386 |
| 15 |
GNf065e06 |
BP072201 |
8 |
431 |
| 16 |
MFB001d09_f |
BP033966 |
9 |
477 |
| 17 |
MR029g11_f |
BP078269 |
12 |
395 |
| 18 |
MFB017e07_f |
BP035188 |
13 |
505 |
| 19 |
MF085h01_f |
BP032794 |
14 |
584 |
| 20 |
GNf017g10 |
BP068630 |
19 |
455 |
| 21 |
MR100d02_f |
BP083646 |
117 |
578 |
| 22 |
MR026h01_f |
BP078027 |
148 |
549 |
| 23 |
MR005a06_f |
BP076279 |
161 |
582 |
| 24 |
GNf088e12 |
BP073876 |
239 |
670 |
|
Lotus japonicus
Kazusa DNA Research Institute