Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001912A_C01 KMC001912A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB64409.1| luteinizing hormone receptor [Meleagris gallopavo] 33 2.4
ref|NP_772918.1| branched-chain-amino-acid transaminase [Bradyrh... 33 3.2
ref|NP_655332.1| SDF, Sodium:dicarboxylate symporter family [Bac... 32 7.1
ref|NP_500158.1| Ion transport protein and Cyclic nucleotide-bin... 32 7.1
dbj|BAB21240.1| Putative protein kinase [Oryza sativa (japonica ... 31 9.3
>gb|AAB64409.1| luteinizing hormone receptor [Meleagris gallopavo]
Length = 601
Score = 33.1 bits (74), Expect = 2.4
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2
Query: 238 SFLDSWICLPKMDIAKGLAAGDILIYFFLNALGFGVLFVC 119
S++ ICLP MDI GL+ IL+ LNA+ F V+ C
Sbjct: 405 SYMKVSICLP-MDIETGLSQAYILLILVLNAVAFVVICAC 443
>ref|NP_772918.1| branched-chain-amino-acid transaminase [Bradyrhizobium japonicum]
gi|27354557|dbj|BAC51543.1| branched-chain-amino-acid
transaminase [Bradyrhizobium japonicum USDA 110]
Length = 295
Score = 32.7 bits (73), Expect = 3.2
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 232 LDSWICLPKMDIAKGLAAGDILI---YFFLNALGFGVLFVCRRIDYCLCM 92
LD+W+ L + IA+ ++ I Y+ N +G GVLF D+CLC+
Sbjct: 78 LDTWLGLVREGIARFPVNAELYIRPMYWPQNGIGGGVLFDPETTDWCLCI 127
>ref|NP_655332.1| SDF, Sodium:dicarboxylate symporter family [Bacillus anthracis
A2012]
Length = 423
Score = 31.6 bits (70), Expect = 7.1
Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 1/44 (2%)
Frame = -2
Query: 241 HSFLDSWICLPKMDIAKGLAAGDIL-IYFFLNALGFGVLFVCRR 113
HSF D+++ + +I K LA GD+L I FF G GV + R
Sbjct: 128 HSFADTFVNIVPTNIMKSLADGDMLAIIFFSVLFGLGVAAIGER 171
>ref|NP_500158.1| Ion transport protein and Cyclic nucleotide-binding domain
containing protein family member [Caenorhabditis
elegans] gi|7105676|gb|AAF36062.1| Hypothetical protein
Y76B12C.1 [Caenorhabditis elegans]
Length = 832
Score = 31.6 bits (70), Expect = 7.1
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -1
Query: 206 DGHCKGVGSWRYLNLFFS*CFGFWSLICL*KDRLLFVYEG 87
D H W Y+NLFF CF L CL R+ FV EG
Sbjct: 256 DVHFGYFNQWLYVNLFFDFCF---LLDCLVGSRMTFVSEG 292
>dbj|BAB21240.1| Putative protein kinase [Oryza sativa (japonica cultivar-group)]
Length = 516
Score = 31.2 bits (69), Expect = 9.3
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -1
Query: 434 RHRRRNQGGSAEIESQRE-FSDTDRSEIQSSR 342
R + N+GGS E++SQR+ SDTD+S+ S+
Sbjct: 475 RRSKHNRGGSTEMDSQRDNNSDTDKSDNPDSK 506
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,625,015
Number of Sequences: 1393205
Number of extensions: 10129380
Number of successful extensions: 23455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
