Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001910A_C01 KMC001910A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563809.1| expressed protein; protein id: At1g08250.1, sup... 82 7e-15
ref|NP_180350.1| putative chorismate mutase/prephenate dehydrata... 79 5e-14
gb|AAM65232.1| putative chorismate mutase/prephenate dehydratase... 79 5e-14
ref|NP_197655.1| chorismate mutase/prephenate dehydratase-like p... 76 4e-13
ref|NP_190058.1| putative chloroplast prephenate dehydratase; pr... 75 7e-13
>ref|NP_563809.1| expressed protein; protein id: At1g08250.1, supported by cDNA:
gi_15810502, supported by cDNA: gi_20259554 [Arabidopsis
thaliana] gi|25407032|pir||E86216 protein T23G18.10
[imported] - Arabidopsis thaliana
gi|6579207|gb|AAF18250.1|AC011438_12 T23G18.10
[Arabidopsis thaliana] gi|15810503|gb|AAL07139.1|
unknown protein [Arabidopsis thaliana]
gi|20259555|gb|AAM14120.1| unknown protein [Arabidopsis
thaliana]
Length = 413
Score = 82.0 bits (201), Expect = 7e-15
Identities = 38/44 (86%), Positives = 42/44 (95%)
Frame = -1
Query: 689 DFDASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSCSS 558
DF+AS+AE RAQNALAEVQEFTSFLRVLGSYPMDMTPWSP+ S+
Sbjct: 368 DFEASMAEARAQNALAEVQEFTSFLRVLGSYPMDMTPWSPTSST 411
>ref|NP_180350.1| putative chorismate mutase/prephenate dehydratase; protein id:
At2g27820.1, supported by cDNA: 37739. [Arabidopsis
thaliana] gi|25407925|pir||D84677 hypothetical protein
At2g27820 [imported] - Arabidopsis thaliana
gi|3860250|gb|AAC73018.1| putative chorismate
mutase/prephenate dehydratase [Arabidopsis thaliana]
Length = 424
Score = 79.3 bits (194), Expect = 5e-14
Identities = 38/44 (86%), Positives = 41/44 (92%)
Frame = -1
Query: 689 DFDASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSCSS 558
DF+AS+AE RAQNAL+EVQEFTSFLRVLGSYPMDMT WSPS SS
Sbjct: 373 DFEASMAESRAQNALSEVQEFTSFLRVLGSYPMDMTSWSPSSSS 416
>gb|AAM65232.1| putative chorismate mutase/prephenate dehydratase [Arabidopsis
thaliana]
Length = 424
Score = 79.3 bits (194), Expect = 5e-14
Identities = 38/44 (86%), Positives = 41/44 (92%)
Frame = -1
Query: 689 DFDASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSCSS 558
DF+AS+AE RAQNAL+EVQEFTSFLRVLGSYPMDMT WSPS SS
Sbjct: 373 DFEASMAESRAQNALSEVQEFTSFLRVLGSYPMDMTSWSPSSSS 416
>ref|NP_197655.1| chorismate mutase/prephenate dehydratase-like protein; protein id:
At5g22630.1, supported by cDNA: gi_16604397, supported
by cDNA: gi_19699062 [Arabidopsis thaliana]
gi|10178237|dbj|BAB11669.1| chorismate mutase/prephenate
dehydratase-like protein [Arabidopsis thaliana]
gi|16604398|gb|AAL24205.1| AT5g22630/MDJ22_5
[Arabidopsis thaliana] gi|19699063|gb|AAL90899.1|
AT5g22630/MDJ22_5 [Arabidopsis thaliana]
gi|23506201|gb|AAN31112.1| At5g22630/MDJ22_5
[Arabidopsis thaliana]
Length = 425
Score = 76.3 bits (186), Expect = 4e-13
Identities = 35/39 (89%), Positives = 38/39 (96%)
Frame = -1
Query: 689 DFDASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWS 573
DF+AS+AE RAQNALAEVQE+TSFLRVLGSYPMDMTPWS
Sbjct: 380 DFEASMAEARAQNALAEVQEYTSFLRVLGSYPMDMTPWS 418
>ref|NP_190058.1| putative chloroplast prephenate dehydratase; protein id:
At3g44720.1, supported by cDNA: gi_17065231 [Arabidopsis
thaliana] gi|2392772|gb|AAB70035.1|AAB70035 putative
chloroplast prephenate dehydratase [Arabidopsis
thaliana] gi|17065232|gb|AAL32770.1| putative
chloroplast prephenate dehydratase [Arabidopsis
thaliana]
Length = 424
Score = 75.5 bits (184), Expect = 7e-13
Identities = 35/39 (89%), Positives = 38/39 (96%)
Frame = -1
Query: 689 DFDASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWS 573
DF+AS+AE RAQNALAEVQE+TSFLRVLGSYPMDMTPWS
Sbjct: 379 DFEASMAEPRAQNALAEVQEYTSFLRVLGSYPMDMTPWS 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,487,267
Number of Sequences: 1393205
Number of extensions: 12599454
Number of successful extensions: 31223
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31154
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
