Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001908A_C01 KMC001908A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72709.1| E2F dimerization factor [Oryza sativa (japonica c... 61 9e-09
gb|AAO72671.1| DP TF [Oryza sativa (japonica cultivar-group)] 50 3e-05
gb|AAA61805.1| cytochrome oxidase I 35 0.54
ref|NP_568116.1| DPB transcription factor; protein id: At5g03410... 34 1.2
pir||T48364 transcription factor-like protein - Arabidopsis thal... 34 1.2
>gb|AAO72709.1| E2F dimerization factor [Oryza sativa (japonica cultivar-group)]
Length = 379
Score = 61.2 bits (147), Expect = 9e-09
Identities = 34/73 (46%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = -3
Query: 588 HDDNYVLKAMTFHERPENENITHNPTDGGEGSSMSGLYHAQVATLV-SNPAVRPPPSSPP 412
HDD++VLKAM+ + + I ++GGE SSM +Y QV S PSSPP
Sbjct: 307 HDDSFVLKAMSSCGEEQIDGIHDLISNGGESSSMPNIYRQQVQQPARSTNGTARLPSSPP 366
Query: 411 LPGILKARVKNEH 373
+PGILK RVK+EH
Sbjct: 367 IPGILKGRVKHEH 379
>gb|AAO72671.1| DP TF [Oryza sativa (japonica cultivar-group)]
Length = 346
Score = 49.7 bits (117), Expect = 3e-05
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = -3
Query: 588 HDDNYVLKAMTFHERPENENITHNPTDGGEGSSMSGLYHAQVATLVSNPAVRPPPSSPPL 409
HDD++VLKA+ F + ++ T G S + +YH + V+ P P+SPP+
Sbjct: 279 HDDSFVLKALGFSGKEPDD--TQAWVGNGGECSTTPIYHQ--SPQVARPNGVRLPTSPPI 334
Query: 408 PGILKARVKNEH 373
PGILK RVK+EH
Sbjct: 335 PGILKGRVKHEH 346
>gb|AAA61805.1| cytochrome oxidase I
Length = 128
Score = 35.4 bits (80), Expect = 0.54
Identities = 19/34 (55%), Positives = 21/34 (60%)
Frame = -1
Query: 116 NHGMLHISIGFIFLFTFSRLNYCTWANTSCHIIL 15
N +H SIGFIFLFT L T AN+S IIL
Sbjct: 86 NSPTMHWSIGFIFLFTLGGLTGVTLANSSIDIIL 119
>ref|NP_568116.1| DPB transcription factor; protein id: At5g03410.1, supported by
cDNA: 206791. [Arabidopsis thaliana]
gi|11125653|emb|CAC15484.1| DP-like protein [Arabidopsis
thaliana]
Length = 385
Score = 34.3 bits (77), Expect = 1.2
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 33/105 (31%)
Frame = -3
Query: 588 HDDNYVLKAMTFHERP--------ENENITHN--PTDGGEGSS-------------MSGL 478
HDDN+VLK M F ++P ++ + HN P + +G S +
Sbjct: 281 HDDNFVLKTMKFCDQPPQQPNGRNNSQLVCHNFTPENPNKGPSTGPTPQLDMYETHLQSQ 340
Query: 477 YHAQVATL----------VSNPAVRPPPSSPPLPGILKARVKNEH 373
H Q + L V++ A P SP LPGI+ + +K E+
Sbjct: 341 QHQQHSQLQIIPMPETNNVTSSADTAPVKSPSLPGIMNSSMKPEN 385
>pir||T48364 transcription factor-like protein - Arabidopsis thaliana
gi|7378623|emb|CAB83299.1| transcription factor-like
protein [Arabidopsis thaliana]
Length = 413
Score = 34.3 bits (77), Expect = 1.2
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 33/105 (31%)
Frame = -3
Query: 588 HDDNYVLKAMTFHERP--------ENENITHN--PTDGGEGSS-------------MSGL 478
HDDN+VLK M F ++P ++ + HN P + +G S +
Sbjct: 309 HDDNFVLKTMKFCDQPPQQPNGRNNSQLVCHNFTPENPNKGPSTGPTPQLDMYETHLQSQ 368
Query: 477 YHAQVATL----------VSNPAVRPPPSSPPLPGILKARVKNEH 373
H Q + L V++ A P SP LPGI+ + +K E+
Sbjct: 369 QHQQHSQLQIIPMPETNNVTSSADTAPVKSPSLPGIMNSSMKPEN 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,080,863
Number of Sequences: 1393205
Number of extensions: 9587830
Number of successful extensions: 36655
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36421
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
