Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001907A_C01 KMC001907A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB90633.1| protein phpsphatase 2C (PP2C) [Fagus sylvatica] 85 7e-16
emb|CAC10358.1| protein phosphatase 2C [Nicotiana tabacum] gi|22... 79 4e-14
gb|AAM61361.1| protein phosphatase 2C, putative [Arabidopsis tha... 60 2e-08
ref|NP_172223.1| protein phosphatase 2C (PP2C), putative; protei... 60 2e-08
gb|AAL16163.1|AF428395_1 AT5g59220/mnc17_110 [Arabidopsis thaliana] 60 3e-08
>emb|CAB90633.1| protein phpsphatase 2C (PP2C) [Fagus sylvatica]
Length = 413
Score = 85.1 bits (209), Expect = 7e-16
Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 4/61 (6%)
Frame = -1
Query: 631 MCLKAEKLPSPPGSPGRDVA----ADGSDKACFDASILLTKLAMARHSSDNVSVVVVDLR 464
MCL+A+K SPP SPG D+A ++ SDKAC DASILLTKLA+ARHS+DNVSVVVVDLR
Sbjct: 349 MCLRAQKPSSPPRSPGNDMAVGAASESSDKACSDASILLTKLALARHSTDNVSVVVVDLR 408
Query: 463 R 461
R
Sbjct: 409 R 409
>emb|CAC10358.1| protein phosphatase 2C [Nicotiana tabacum]
gi|22553023|emb|CAC84141.2| protein phosphatase 2C
[Nicotiana tabacum]
Length = 416
Score = 79.3 bits (194), Expect = 4e-14
Identities = 41/62 (66%), Positives = 49/62 (78%), Gaps = 4/62 (6%)
Frame = -1
Query: 631 MCLKAEKLPSPPGSPGRDV----AADGSDKACFDASILLTKLAMARHSSDNVSVVVVDLR 464
MCL++ K PSP GSP DV A + SD+ C DASILLTKLA+ARHS+DNVSVVVVDLR
Sbjct: 354 MCLQSRKPPSPHGSPENDVTVTGAGESSDQLCSDASILLTKLALARHSTDNVSVVVVDLR 413
Query: 463 RE 458
++
Sbjct: 414 KD 415
>gb|AAM61361.1| protein phosphatase 2C, putative [Arabidopsis thaliana]
Length = 442
Score = 60.5 bits (145), Expect = 2e-08
Identities = 27/37 (72%), Positives = 35/37 (93%)
Frame = -1
Query: 562 SDKACFDASILLTKLAMARHSSDNVSVVVVDLRREKR 452
+DKAC +AS+LLTKLA+A+HSSDNVSVVV+DLRR ++
Sbjct: 402 TDKACTEASVLLTKLALAKHSSDNVSVVVIDLRRRRK 438
>ref|NP_172223.1| protein phosphatase 2C (PP2C), putative; protein id: At1g07430.1,
supported by cDNA: 118185., supported by cDNA:
gi_17979174, supported by cDNA: gi_20259128 [Arabidopsis
thaliana] gi|25352229|pir||B86209 protein F22G5.22
[imported] - Arabidopsis thaliana
gi|8778547|gb|AAF79555.1|AC022464_13 F22G5.22
[Arabidopsis thaliana] gi|17979175|gb|AAL49783.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
gi|20259129|gb|AAM14280.1| putative phosphatase 2C
[Arabidopsis thaliana]
Length = 442
Score = 60.5 bits (145), Expect = 2e-08
Identities = 27/37 (72%), Positives = 35/37 (93%)
Frame = -1
Query: 562 SDKACFDASILLTKLAMARHSSDNVSVVVVDLRREKR 452
+DKAC +AS+LLTKLA+A+HSSDNVSVVV+DLRR ++
Sbjct: 402 TDKACTEASVLLTKLALAKHSSDNVSVVVIDLRRRRK 438
>gb|AAL16163.1|AF428395_1 AT5g59220/mnc17_110 [Arabidopsis thaliana]
Length = 413
Score = 59.7 bits (143), Expect = 3e-08
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 11/69 (15%)
Frame = -1
Query: 631 MCLKAEKLPSPPGSPGRDVAADGS-----------DKACFDASILLTKLAMARHSSDNVS 485
MCL+ + SP R++ G+ DKAC +AS+LLT+LA+AR SSDNVS
Sbjct: 344 MCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLALARQSSDNVS 403
Query: 484 VVVVDLRRE 458
VVVVDLRR+
Sbjct: 404 VVVVDLRRD 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,176,584
Number of Sequences: 1393205
Number of extensions: 13041831
Number of successful extensions: 64180
Number of sequences better than 10.0: 294
Number of HSP's better than 10.0 without gapping: 52094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62256
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
