KMC001905A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001905A_C01 KMC001905A_c01
cacacggctgaatggcatagttgacaagatgggaggtggatttagggtgcttcacttggt
tagaccgtttctctcgtttcTTCCTGAAGTTCAGACAGCTGACAGGAAAGTTCCATTCAG
AGAGAAGGTCATATATACnTGTGATCTCTCTTTTCATTTTCCTGnGTCTGCAGTCAGCTC
CCTCTGTATGGGATACACTCAACAACTGGTGCGGATCCATTCTATTGGATGCGTGTCATC
CTTGCTTCCAACCGTGGAACTGTCATGGAGCTCGGGATCACTCCCATTGTGACTTCTGGA
CTTGTGATGCAGCTTTTAGCTGGATCAAAGATCATTGAAGTTGACAACAATGTACGAGAG
GATCGTGCCCTATTGAATGGAGCACAGAAGCTTCTTGGTATATTGATAGCTGTCGGAGAG
GCTGnGTTTTTTTTTTTTTTTTTTTATAGCTAATTAAGCAAACTTCTTTGCAAAATGAAC
ATTGTTTGGGAACAATATATGATCAAGCGCAAAGCAACATCATGCATGGATGTGCCACAA
AAACCTTTTTTATTTTGCAAAATCTATCCTAAATTAAGCCTCTACAAGAGCATCTCTATT
GTACCTCAATCCAACGTTGGTTGAAACCCAACCATAATAAAGCACAAAATGTAAAGGTAA
GGCACCATCTCATGTTTTGGGTTAAGCATCATCAAGAGCGAGGACTCCAGGGAGTGGCTT
CCCCTCAAGAAGCTCTAAGGCTGGCACCGCCACCGGCTGGAGATGTGGCTCATCTTGTCT
GCAAGCCCAACCTTCTCCACAGCAGCAACAGAGTCACCTCCTCCAATGATGGTTGTTACT
CCCTTGCCACTTAGCTCTGCCAGTTTCTTGGCTATGGTCTCTGTTCCTACTGCAAACTTA
TCAAACTCAAACACACCCATTGGTCCATTCCAAATGACGGTCTGAGTCTTGTCCAATGCT
TCACCAAATGTTTTGATGGAATCAGGTCCAATATCCAACCCCATCCATCCGTCAGGGATG
CTTGAAGCTGGCACAGTCTT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001905A_C01 KMC001905A_c01
(1040 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF18411.1|AF190652_1 putative integral membrane protein [Pha... 171 9e-59
ref|NP_180972.1| putative protein transport protein SEC61 alpha ... 171 6e-58
gb|AAM13046.1| putative protein transport protein SEC61 alpha su... 171 7e-58
gb|AAM65038.1| putative protein transport protein SEC61 alpha su... 171 7e-58
ref|NP_174225.1| flower pigmentation protein ATAN11; protein id:... 166 3e-56
>gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris]
Length = 476
Score = 171 bits (434), Expect(2) = 9e-59
Identities = 89/93 (95%), Positives = 90/93 (96%)
Frame = +1
Query: 145 SLFSFSXVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 324
SLF F VCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG
Sbjct: 40 SLFIF-LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 98
Query: 325 SKIIEVDNNVREDRALLNGAQKLLGILIAVGEA 423
SKIIEVDNNVREDRALLNGAQKLLGILIA+GEA
Sbjct: 99 SKIIEVDNNVREDRALLNGAQKLLGILIAIGEA 131
Score = 79.0 bits (193), Expect(2) = 9e-59
Identities = 39/44 (88%), Positives = 39/44 (88%)
Frame = +2
Query: 29 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTCDLSFHF 160
MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYT F F
Sbjct: 1 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIF 44
>ref|NP_180972.1| putative protein transport protein SEC61 alpha subunit; protein id:
At2g34250.1, supported by cDNA: 4598., supported by
cDNA: gi_13605798 [Arabidopsis thaliana]
gi|7446500|pir||T02313 endoplasmic reticulum insertion
protein F13P17.9 - Arabidopsis thaliana
gi|3337356|gb|AAC27401.1| putative protein transport
protein SEC61 alpha subunit [Arabidopsis thaliana]
gi|13605799|gb|AAK32885.1|AF367298_1 At2g34250/F13P17.9
[Arabidopsis thaliana] gi|21593809|gb|AAM65776.1|
putative protein transport protein SEC61 alpha subunit
[Arabidopsis thaliana] gi|23308213|gb|AAN18076.1|
At2g34250/F13P17.9 [Arabidopsis thaliana]
Length = 475
Score = 171 bits (434), Expect(2) = 6e-58
Identities = 89/93 (95%), Positives = 90/93 (96%)
Frame = +1
Query: 145 SLFSFSXVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 324
SLF F VCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG
Sbjct: 40 SLFIF-LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 98
Query: 325 SKIIEVDNNVREDRALLNGAQKLLGILIAVGEA 423
SKIIEVDNNVREDRALLNGAQKLLGILIA+GEA
Sbjct: 99 SKIIEVDNNVREDRALLNGAQKLLGILIAIGEA 131
Score = 76.3 bits (186), Expect(2) = 6e-58
Identities = 37/44 (84%), Positives = 39/44 (88%)
Frame = +2
Query: 29 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTCDLSFHF 160
MGGGFRVLHLVRPFL+FLPEVQ+ADRKVPFREKVIYT F F
Sbjct: 1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIF 44
>gb|AAM13046.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis
thaliana]
Length = 475
Score = 171 bits (434), Expect(2) = 7e-58
Identities = 89/93 (95%), Positives = 90/93 (96%)
Frame = +1
Query: 145 SLFSFSXVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 324
SLF F VCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG
Sbjct: 40 SLFIF-LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 98
Query: 325 SKIIEVDNNVREDRALLNGAQKLLGILIAVGEA 423
SKIIEVDNNVREDRALLNGAQKLLGILIA+GEA
Sbjct: 99 SKIIEVDNNVREDRALLNGAQKLLGILIAIGEA 131
Score = 75.9 bits (185), Expect(2) = 7e-58
Identities = 36/44 (81%), Positives = 39/44 (87%)
Frame = +2
Query: 29 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTCDLSFHF 160
MGGGFRVLHLVRPFL+FLPEVQ+ADRK+PFREKVIYT F F
Sbjct: 1 MGGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIF 44
>gb|AAM65038.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis
thaliana]
Length = 475
Score = 171 bits (434), Expect(2) = 7e-58
Identities = 89/93 (95%), Positives = 90/93 (96%)
Frame = +1
Query: 145 SLFSFSXVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 324
SLF F VCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG
Sbjct: 40 SLFIF-LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 98
Query: 325 SKIIEVDNNVREDRALLNGAQKLLGILIAVGEA 423
SKIIEVDNNVREDRALLNGAQKLLGILIA+GEA
Sbjct: 99 SKIIEVDNNVREDRALLNGAQKLLGILIAIGEA 131
Score = 75.9 bits (185), Expect(2) = 7e-58
Identities = 36/44 (81%), Positives = 39/44 (87%)
Frame = +2
Query: 29 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTCDLSFHF 160
MGGGFRVLHLVRPFL+FLPEVQ+ADRK+PFREKVIYT F F
Sbjct: 1 MGGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIF 44
>ref|NP_174225.1| flower pigmentation protein ATAN11; protein id: At1g29310.1,
supported by cDNA: 36037., supported by cDNA:
gi_20260295 [Arabidopsis thaliana]
gi|25307860|pir||F86415 probable protein transport
protein SEC61 alpha chain - Arabidopsis thaliana
gi|9502410|gb|AAF88109.1|AC021043_2 Putative protein
transport protein SEC61 alpha subunit [Arabidopsis
thaliana]
Length = 475
Score = 166 bits (420), Expect(2) = 3e-56
Identities = 87/93 (93%), Positives = 88/93 (94%)
Frame = +1
Query: 145 SLFSFSXVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 324
SLF F VCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG
Sbjct: 40 SLFIF-LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG 98
Query: 325 SKIIEVDNNVREDRALLNGAQKLLGILIAVGEA 423
SKIIEVDNNVREDRALLNGAQKLL IL A+GEA
Sbjct: 99 SKIIEVDNNVREDRALLNGAQKLLWILSAIGEA 131
Score = 75.9 bits (185), Expect(2) = 3e-56
Identities = 36/44 (81%), Positives = 39/44 (87%)
Frame = +2
Query: 29 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTCDLSFHF 160
MGGGFRVLHLVRPFL+FLPEVQ+ADRK+PFREKVIYT F F
Sbjct: 1 MGGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIF 44
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 960,506,788
Number of Sequences: 1393205
Number of extensions: 22270067
Number of successful extensions: 71993
Number of sequences better than 10.0: 441
Number of HSP's better than 10.0 without gapping: 65811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71371
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61256865594
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MFB043d09_f |
BP037138 |
1 |
448 |
| 2 |
SPD021b01_f |
BP045625 |
368 |
942 |
| 3 |
MWM120b06_f |
AV766650 |
368 |
841 |
| 4 |
MFBL001d07_f |
BP041321 |
446 |
933 |
| 5 |
GENf045b03 |
BP060241 |
446 |
907 |
| 6 |
GENf023h05 |
BP059335 |
446 |
825 |
| 7 |
MR021b02_f |
BP077571 |
448 |
973 |
| 8 |
MWM013h02_f |
AV764799 |
448 |
630 |
| 9 |
SPDL026b06_f |
BP053590 |
448 |
834 |
| 10 |
SPD031c11_f |
BP046453 |
452 |
1019 |
| 11 |
SPD071d01_f |
BP049673 |
461 |
1046 |
| 12 |
MFB096g08_f |
BP041022 |
487 |
1000 |
| 13 |
MFBL016d12_f |
BP042066 |
488 |
998 |
| 14 |
GENf032f04 |
BP059714 |
533 |
956 |
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Lotus japonicus
Kazusa DNA Research Institute