Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001904A_C01 KMC001904A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566563.1| E2, ubiquitin-conjugating enzyme, putative; pro... 66 5e-10
ref|NP_113835.1| Scm-related gene containing four mbt domains [R... 37 0.23
ref|NP_651318.1| CG13648-PA [Drosophila melanogaster] gi|7301246... 36 0.40
dbj|BAC65948.1| OSJNBb0055I24.16 [Oryza sativa (japonica cultiva... 36 0.40
gb|ZP_00042731.1| hypothetical protein [Magnetococcus sp. MC-1] 35 0.89
>ref|NP_566563.1| E2, ubiquitin-conjugating enzyme, putative; protein id:
At3g17000.1, supported by cDNA: gi_14423395 [Arabidopsis
thaliana] gi|7670024|dbj|BAA94978.1| contains similarity
to similar to ubiquitin conjugating
enzyme~gene_id:K14A17.7 [Arabidopsis thaliana]
gi|14423396|gb|AAK62380.1|AF386935_1 Unknown protein
[Arabidopsis thaliana]
Length = 309
Score = 65.9 bits (159), Expect = 5e-10
Identities = 46/119 (38%), Positives = 59/119 (48%), Gaps = 1/119 (0%)
Frame = -1
Query: 655 EDQTQVQLHNPEALPAGEVIPDQSVDRIIEEQEVTVNANPNPSEVEASTETPSNVVSSNQ 476
E Q + + ++ + I D D+IIEE VN + A VV ++
Sbjct: 199 EPQEAITVVEERSIATTDTIVD---DQIIEETAEAVNTAASVVPAAAPLPAVEVVVKAS- 254
Query: 475 LLQNSETTRGQNLKPETRVQKP-DDRLFTWAAIGLTIAIVVLLLKKFIKSTEHGAVFMD 302
G+ QKP DDRLFTWAA+GLTIAI+VLLLKKFIKS + FMD
Sbjct: 255 -------VSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGYSTGFMD 306
>ref|NP_113835.1| Scm-related gene containing four mbt domains [Rattus norvegicus]
gi|8100077|dbj|BAA96304.1| polycomb-group protein [Rattus
norvegicus]
Length = 863
Score = 37.0 bits (84), Expect = 0.23
Identities = 35/136 (25%), Positives = 63/136 (45%), Gaps = 8/136 (5%)
Frame = -1
Query: 655 EDQTQVQLHNPEALPAGEVIPDQSVDRIIEEQEVTV--NANPNPSEVEASTETPSNVVSS 482
ED+ + ++L G Q D + EE EV+ + +P+P++ E ST P + +
Sbjct: 697 EDEDDADDGDDDSLTEGSTSEQQ--DELHEESEVSEKKSCSPSPTQSEMSTPLPPDTQTD 754
Query: 481 NQLLQNSETTRGQNLKP---ETRVQKPDDRLFTWAAIGLTIAIVVLLLKKFIKSTE---H 320
+ Q S + G+N P E R++ + + ++A VV +FI+ST+
Sbjct: 755 KREAQTSSLSDGENKPPSPKEIRIEVDERLHLDSNPLKWSVADVV----RFIRSTDCAPL 810
Query: 319 GAVFMDGS*MGSLLIL 272
+F+D G L+L
Sbjct: 811 ARIFLDQEIDGQALLL 826
>ref|NP_651318.1| CG13648-PA [Drosophila melanogaster] gi|7301246|gb|AAF56376.1|
CG13648-PA [Drosophila melanogaster]
Length = 2768
Score = 36.2 bits (82), Expect = 0.40
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Frame = -1
Query: 613 PAGEVIPDQSVDRIIEEQEVTVNANP-----NPSEVEASTETPSNVVSSNQLLQNSET-- 455
PAGE IP S I ++E T + P E E STE P++ +S++ +NS T
Sbjct: 1654 PAGEKIPTSS---ITPDEEPTATSAPVAKPDEDVEKETSTEIPTDAPASSEEDENSSTDQ 1710
Query: 454 --TRGQNLKPETRVQKPDD 404
+ KPET Q P++
Sbjct: 1711 IPSEVPEKKPETPAQTPEE 1729
>dbj|BAC65948.1| OSJNBb0055I24.16 [Oryza sativa (japonica cultivar-group)]
Length = 826
Score = 36.2 bits (82), Expect = 0.40
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = -1
Query: 598 IPDQSVDRIIEEQEVTVNANPNPSEVEASTETPSNVVSSN-----QLLQNSETTRGQNLK 434
IPD +D +E ++ +A P+P+ + A E P+N+ N QL+ T RG+
Sbjct: 219 IPDDELDAANKEVAMSQSAPPSPAPMRAGVEPPTNIAGINGSRPTQLV--VRTVRGRRAM 276
Query: 433 PETRVQKPDDRLFTWAAIGLTIAIVVLLLKKFIKSTEHGAVFMDGS*MGSLLIL 272
E R AA+ + K I+S + GA+++ G L +L
Sbjct: 277 EELVAMMAHCRRCELAAVADRHVVSRFSHKGRIQSPKDGAIWLFGRSCSQLALL 330
>gb|ZP_00042731.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 1325
Score = 35.0 bits (79), Expect = 0.89
Identities = 22/72 (30%), Positives = 37/72 (50%)
Frame = -1
Query: 661 IEEDQTQVQLHNPEALPAGEVIPDQSVDRIIEEQEVTVNANPNPSEVEASTETPSNVVSS 482
+E + +Q + N ALP G+VI D +VD + V+A + S E T+ + +S
Sbjct: 636 VEGEASQSYIENDVALPDGDVIADGTVDVALAIDSTIVSAFSDESSDE-DTQMQLTITAS 694
Query: 481 NQLLQNSETTRG 446
N LQ +++ G
Sbjct: 695 NGTLQFADSVAG 706
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,902,149
Number of Sequences: 1393205
Number of extensions: 10432143
Number of successful extensions: 25769
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25724
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
