Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001902A_C01 KMC001902A_c01
(777 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08861.1| emb|CAB79781.1~gene_id:MTI20.17~similar to unkno... 64 2e-09
gb|AAM64606.1| unknown [Arabidopsis thaliana] 64 2e-09
ref|NP_568871.1| putative protein; protein id: At5g57910.1, supp... 64 2e-09
ref|NP_194792.1| putative protein; protein id: At4g30630.1, supp... 45 9e-04
ref|ZP_00115718.1| hypothetical protein [Synechococcus sp. WH 8102] 37 0.24
>dbj|BAB08861.1| emb|CAB79781.1~gene_id:MTI20.17~similar to unknown protein
[Arabidopsis thaliana]
Length = 166
Score = 64.3 bits (155), Expect = 2e-09
Identities = 44/101 (43%), Positives = 55/101 (53%), Gaps = 8/101 (7%)
Frame = -1
Query: 663 DLNHKDMSHSMKEPAKKSITPFFDLNQIAREEEELLVT-----EPVRIEEPKRITQRDAS 499
DLNH + +H + + K P FDLNQI+ EEE+ E R+EE + S
Sbjct: 70 DLNHSEKAHDETKTSPKRRVPLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMIS 129
Query: 498 --EEQLNDIMLSVCRNDGSGSSRTSVKRKISWQDQV-ALRV 385
E Q D+ S CRN G+GS+ KRKISWQD V ALRV
Sbjct: 130 SIEMQQKDVKPSSCRNGGNGSN----KRKISWQDPVAALRV 166
>gb|AAM64606.1| unknown [Arabidopsis thaliana]
Length = 207
Score = 64.3 bits (155), Expect = 2e-09
Identities = 44/101 (43%), Positives = 55/101 (53%), Gaps = 8/101 (7%)
Frame = -1
Query: 663 DLNHKDMSHSMKEPAKKSITPFFDLNQIAREEEELLVT-----EPVRIEEPKRITQRDAS 499
DLNH + +H + + K P FDLNQI+ EEE+ E R+EE + S
Sbjct: 111 DLNHSEKAHDETKTSPKRRVPLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMIS 170
Query: 498 --EEQLNDIMLSVCRNDGSGSSRTSVKRKISWQDQV-ALRV 385
E Q D+ S CRN G+GS+ KRKISWQD V ALRV
Sbjct: 171 SIEMQQKDVKPSSCRNGGNGSN----KRKISWQDPVAALRV 207
>ref|NP_568871.1| putative protein; protein id: At5g57910.1, supported by cDNA:
31005. [Arabidopsis thaliana]
gi|26453250|dbj|BAC43698.1| unknown protein [Arabidopsis
thaliana] gi|28950733|gb|AAO63290.1| At5g57910
[Arabidopsis thaliana]
Length = 207
Score = 64.3 bits (155), Expect = 2e-09
Identities = 44/101 (43%), Positives = 55/101 (53%), Gaps = 8/101 (7%)
Frame = -1
Query: 663 DLNHKDMSHSMKEPAKKSITPFFDLNQIAREEEELLVT-----EPVRIEEPKRITQRDAS 499
DLNH + +H + + K P FDLNQI+ EEE+ E R+EE + S
Sbjct: 111 DLNHSEKAHDETKTSPKRRVPLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMIS 170
Query: 498 --EEQLNDIMLSVCRNDGSGSSRTSVKRKISWQDQV-ALRV 385
E Q D+ S CRN G+GS+ KRKISWQD V ALRV
Sbjct: 171 SIEMQQKDVKPSSCRNGGNGSN----KRKISWQDPVAALRV 207
>ref|NP_194792.1| putative protein; protein id: At4g30630.1, supported by cDNA:
32848. [Arabidopsis thaliana] gi|25407668|pir||D85358
hypothetical protein AT4g30630 [imported] - Arabidopsis
thaliana gi|7269964|emb|CAB79781.1| putative protein
[Arabidopsis thaliana] gi|21592814|gb|AAM64763.1|
unknown [Arabidopsis thaliana]
Length = 237
Score = 45.4 bits (106), Expect = 9e-04
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -1
Query: 603 PFFDLNQIAREEEELLVTEPVRIEEPKRITQRDASEEQLN-DIMLSVCRNDGSGSSRTSV 427
P FDLNQI+REEEE V + E + D L+ + L +C D +V
Sbjct: 165 PGFDLNQISREEEEPEVNGEHMVAEAMKNAMLDNRISDLHVERKLPIC-GDVEKELNRAV 223
Query: 426 KRKISWQDQVALRV 385
KRK++WQD VAL V
Sbjct: 224 KRKVTWQDPVALSV 237
>ref|ZP_00115718.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 262
Score = 37.4 bits (85), Expect = 0.24
Identities = 24/77 (31%), Positives = 37/77 (47%)
Frame = +2
Query: 464 QTDNMMSLSCSSLASLCVILFGSSILTGSVTSNSSSSLAIWFKSKNGVMLFFAGSFIL*L 643
+TDN L+ ++A +LFG IL GS+TS + + +W G+ A + L L
Sbjct: 126 RTDNPAPLNTRTIAIGAAVLFGIGILNGSLTSGTGLFVTLWLVRWFGLSYSRAVAHTLIL 185
Query: 644 ISL*FKSSGGAELRKEG 694
+ L + SG L G
Sbjct: 186 VGLGWNGSGALVLGFSG 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,949,188
Number of Sequences: 1393205
Number of extensions: 12310493
Number of successful extensions: 31669
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 30507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31633
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
