Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001900A_C01 KMC001900A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK69274.1| unknown [Glycine max] 44 7e-04
gb|EAA15150.1| agCP4972 [Anopheles gambiae str. PEST] 37 0.15
ref|NP_032705.1| nuclear receptor coactivator 3 [Mus musculus] g... 36 0.19
gb|AAO52461.1| similar to Plasmodium falciparum. Hypothetical pr... 35 0.56
ref|NP_523902.2| sprouty CG1921-PB gi|24656844|ref|NP_728881.1| ... 35 0.56
>gb|AAK69274.1| unknown [Glycine max]
Length = 408
Score = 44.3 bits (103), Expect = 7e-04
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = -1
Query: 395 RFSSPEGEGNGKSPTLKMRKEDLENERMVLIIHQKELELMNLQHQQQQQQ 246
RFSS + E + L+ + LE ERMVL++ KELEL+N+Q QQ QQQ
Sbjct: 344 RFSSKK-EREMEKDKLQNERRRLEIERMVLLLRHKELELVNVQQQQHQQQ 392
Score = 41.2 bits (95), Expect = 0.006
Identities = 23/41 (56%), Positives = 32/41 (77%)
Frame = -2
Query: 481 RIMQLEEQQLSYQTQAFDLGKAQAVKLGPGLAAQKEREMER 359
R++QLEEQQ+SYQ QAF+L K Q +K +++KEREME+
Sbjct: 317 RVVQLEEQQVSYQMQAFELEK-QRLKWA-RFSSKKEREMEK 355
>gb|EAA15150.1| agCP4972 [Anopheles gambiae str. PEST]
Length = 1120
Score = 36.6 bits (83), Expect = 0.15
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 241 CCCCCCCWC 267
CCCCCCCWC
Sbjct: 16 CCCCCCCWC 24
>ref|NP_032705.1| nuclear receptor coactivator 3 [Mus musculus]
gi|23396768|sp|O09000|NCO3_MOUSE Nuclear receptor
coactivator 3 (NCoA-3) (Thyroid hormone receptor
activator molecule 1) (TRAM-1) (ACTR)
(Receptor-associated coactivator 3) (RAC-3) (Amplified in
breast cancer-1 protein homolog) (AIB-1) (Steroid
receptor coactivator protein 3) (SRC-3) (CBP-interacting
protein) (p/CIP) (pCIP) gi|2934906|gb|AAC05020.1|
p300/CBP/Co-Integrator protein; nuclear receptor
coactivator protein; p/CIP [Mus musculus]
Length = 1398
Score = 36.2 bits (82), Expect = 0.19
Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 2/61 (3%)
Frame = -1
Query: 419 SPSGEIGPRFSS--PEGEGNGKSPTLKMRKEDLENERMVLIIHQKELELMNLQHQQQQQQ 246
SP G G +S+ P G PTL +R L R L Q++ + Q QQQQQQ
Sbjct: 925 SPLGRTGADYSATLPRPAMGGSVPTLPLRSNRLPGARPSLQQQQQQQQQQQQQQQQQQQQ 984
Query: 245 Q 243
Q
Sbjct: 985 Q 985
>gb|AAO52461.1| similar to Plasmodium falciparum. Hypothetical protein [Dictyostelium
discoideum]
Length = 1418
Score = 34.7 bits (78), Expect = 0.56
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -1
Query: 350 LKMRKEDLENERMVLIIHQKELELMNLQHQQQQQQQ 243
L++ K LE E+ LI+ Q++ L+ Q QQQQQQQ
Sbjct: 1068 LRLEKAKLEKEKEKLILKQQQDNLLYQQQQQQQQQQ 1103
>ref|NP_523902.2| sprouty CG1921-PB gi|24656844|ref|NP_728881.1| sprouty CG1921-PC
gi|13124543|sp|O44783|SPY_DROME Protein sprouty (Spry)
gi|7292366|gb|AAF47772.1| CG1921-PB [Drosophila
melanogaster] gi|23092923|gb|AAN11566.1| CG1921-PC
[Drosophila melanogaster]
Length = 589
Score = 34.7 bits (78), Expect = 0.56
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 395 RFSSPEGE-GNGKSPTLKMRKEDLENERMVLIIHQKELELMNLQHQQQQQQQH 240
R P G+ NG++ T + N+ + L HQ+ L+ Q QQQQQQQH
Sbjct: 211 RSQHPAGQQDNGQTTTHHLLLLPQRNQHLHLQQHQQHLQQQQQQQQQQQQQQH 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,436,088
Number of Sequences: 1393205
Number of extensions: 8273425
Number of successful extensions: 53234
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 28787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43942
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
