Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001898A_C01 KMC001898A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10214.1| contains similarity to unknown protein~emb|CAB89... 184 7e-46
ref|NP_198805.1| putative protein; protein id: At5g39890.1, supp... 184 7e-46
ref|NP_197016.1| putative protein; protein id: At5g15120.1 [Arab... 181 6e-45
dbj|BAB03364.1| unnamed protein product [Oryza sativa (japonica ... 150 1e-35
pir||G84856 hypothetical protein At2g42670 [imported] - Arabidop... 124 6e-28
>dbj|BAB10214.1| contains similarity to unknown
protein~emb|CAB89322.1~gene_id:MYH19.8 [Arabidopsis
thaliana]
Length = 270
Score = 184 bits (467), Expect = 7e-46
Identities = 89/137 (64%), Positives = 107/137 (77%), Gaps = 2/137 (1%)
Frame = +1
Query: 166 SSGSKRNRRRQKK--MPPVQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVG 339
S+ K+ +RR KK + PVQKLFDTCK+VFA G +G +P ++I+ L+AVLD I+PEDVG
Sbjct: 23 SNSRKKIQRRSKKTLICPVQKLFDTCKKVFADGKSGTVPSQENIEMLRAVLDEIKPEDVG 82
Query: 340 LKPDMPHFRSSSAQRIPKITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFG 519
+ P M +FRS+ R P +TYLHIY C +FS+ IFCLPPSGVIPLHNHP MTVFSKLLFG
Sbjct: 83 VNPKMSYFRSTVTGRSPLVTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFG 142
Query: 520 TMHIKSYDWVVDLPPES 570
TMHIKSYDWV D P S
Sbjct: 143 TMHIKSYDWVPDSPQPS 159
>ref|NP_198805.1| putative protein; protein id: At5g39890.1, supported by cDNA:
100590. [Arabidopsis thaliana]
gi|21536502|gb|AAM60834.1| unknown [Arabidopsis
thaliana] gi|27808558|gb|AAO24559.1| At5g39890
[Arabidopsis thaliana]
Length = 276
Score = 184 bits (467), Expect = 7e-46
Identities = 89/137 (64%), Positives = 107/137 (77%), Gaps = 2/137 (1%)
Frame = +1
Query: 166 SSGSKRNRRRQKK--MPPVQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVG 339
S+ K+ +RR KK + PVQKLFDTCK+VFA G +G +P ++I+ L+AVLD I+PEDVG
Sbjct: 29 SNSRKKIQRRSKKTLICPVQKLFDTCKKVFADGKSGTVPSQENIEMLRAVLDEIKPEDVG 88
Query: 340 LKPDMPHFRSSSAQRIPKITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFG 519
+ P M +FRS+ R P +TYLHIY C +FS+ IFCLPPSGVIPLHNHP MTVFSKLLFG
Sbjct: 89 VNPKMSYFRSTVTGRSPLVTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFG 148
Query: 520 TMHIKSYDWVVDLPPES 570
TMHIKSYDWV D P S
Sbjct: 149 TMHIKSYDWVPDSPQPS 165
>ref|NP_197016.1| putative protein; protein id: At5g15120.1 [Arabidopsis thaliana]
gi|11357884|pir||T49947 hypothetical protein F8M21.10 -
Arabidopsis thaliana gi|7671481|emb|CAB89322.1| putative
protein [Arabidopsis thaliana]
Length = 293
Score = 181 bits (459), Expect = 6e-45
Identities = 88/151 (58%), Positives = 111/151 (73%), Gaps = 19/151 (12%)
Frame = +1
Query: 166 SSGSKRNRRRQKKM----------------PPVQKLFDTCKEVFASGGTGFIPPPQDIQR 297
+S K+N+ + KKM V++LF+TCKEVF++GG G IP IQ+
Sbjct: 26 NSVKKKNKNKNKKMMMTWRRKKIDSPADGITAVRRLFNTCKEVFSNGGPGVIPSEDKIQQ 85
Query: 298 LQAVLDAIRPEDVGLKPDMPHFRSSS---AQRIPKITYLHIYECEKFSMGIFCLPPSGVI 468
L+ +LD ++PEDVGL P MP+FR +S A+ P ITYLH+++C++FS+GIFCLPPSGVI
Sbjct: 86 LREILDDMKPEDVGLTPTMPYFRPNSGVEARSSPPITYLHLHQCDQFSIGIFCLPPSGVI 145
Query: 469 PLHNHPGMTVFSKLLFGTMHIKSYDWVVDLP 561
PLHNHPGMTVFSKLLFGTMHIKSYDWVVD P
Sbjct: 146 PLHNHPGMTVFSKLLFGTMHIKSYDWVVDAP 176
>dbj|BAB03364.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 246
Score = 150 bits (378), Expect = 1e-35
Identities = 68/113 (60%), Positives = 86/113 (75%)
Frame = +1
Query: 208 PPVQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQRI 387
P VQ LF+ C+EVF + G +P P ++R+++VLD+I DV L +M +FR ++ I
Sbjct: 14 PAVQGLFEACREVFGASA-GAVPSPAGVERIKSVLDSISAADVSLTRNMSYFRRVNSNGI 72
Query: 388 PKITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 546
PKITYLH+YECE FS+GIFCLPP GVIPLHNHP MTVFSKLLFG + +KSYDW
Sbjct: 73 PKITYLHLYECEAFSIGIFCLPPRGVIPLHNHPNMTVFSKLLFGELRVKSYDW 125
>pir||G84856 hypothetical protein At2g42670 [imported] - Arabidopsis thaliana
Length = 242
Score = 124 bits (312), Expect = 6e-28
Identities = 60/121 (49%), Positives = 85/121 (69%), Gaps = 10/121 (8%)
Frame = +1
Query: 217 QKLFDTCKEVFASGGTGFIPPPQD-IQRLQAVLDAIRPEDVGLKPDMPHFRSSSA----- 378
Q+L++TCK F+S G P +D +++++ VL+ I+P DVG++ D RS S
Sbjct: 6 QRLYNTCKASFSSDG----PITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNER 61
Query: 379 ----QRIPKITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 546
Q P I YLH++EC+ FS+GIFC+PPS +IPLHNHPGMTV SKL++G+MH+KSYDW
Sbjct: 62 NGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYDW 121
Query: 547 V 549
+
Sbjct: 122 L 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,597,042
Number of Sequences: 1393205
Number of extensions: 11150162
Number of successful extensions: 64971
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 35565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56961
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
