Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001895A_C01 KMC001895A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173597.1| unknown protein; protein id: At1g21780.1, suppo... 154 5e-47
ref|NP_175972.1| hypothetical protein; protein id: At1g55760.1 [... 113 5e-30
gb|AAF79503.1|AC002328_11 F20N2.15 [Arabidopsis thaliana] 109 3e-23
ref|NP_492449.2| Maternal Effect embryonic Lethal MEL-26, speckl... 51 1e-05
ref|NP_181577.1| hypothetical protein; protein id: At2g40450.1 [... 49 4e-05
>ref|NP_173597.1| unknown protein; protein id: At1g21780.1, supported by cDNA: 36526.
[Arabidopsis thaliana] gi|25518571|pir||E86351
hypothetical protein F8K7.22 - Arabidopsis thaliana
gi|5263330|gb|AAD41432.1|AC007727_21 Contains similarity
to gb|AJ000644 SPOP (speckle-type POZ protein) from Homo
sapiens and contains a PF|00651 BTB/POZ domain. ESTs
gb|T75841, gb|R89974, gb|R30221, gb|N96386, gb|T76457,
gb|AI100013 and gb|T76456 come from this gene.
[Arabidopsis thaliana] gi|21593141|gb|AAM65090.1|
unknown [Arabidopsis thaliana]
Length = 326
Score = 154 bits (389), Expect(2) = 5e-47
Identities = 72/103 (69%), Positives = 86/103 (82%)
Frame = -2
Query: 626 EKETSTIHMEDMSQQSCKALLSYLYGTIKHEDFWKHRLALLGAANKFEIGDLKDACEESL 447
EKE+STIH++DMS++SC ALLSYLYG I E+FWKHRLALLGAANK++I DLK ACEESL
Sbjct: 196 EKESSTIHIDDMSRESCMALLSYLYGNITQEEFWKHRLALLGAANKYDITDLKAACEESL 255
Query: 446 LDDLTSGNVLSRLNEAWLYQLPQLKKGCFTFLFDFGHRYMMLE 318
++D+ S NVL RL EAWLYQL +LKKGC +LFDFG Y + E
Sbjct: 256 MEDINSSNVLERLQEAWLYQLEKLKKGCLMYLFDFGKIYDVRE 298
Score = 55.8 bits (133), Expect(2) = 5e-47
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = -1
Query: 336 QIYDVREEINNFFLLAERELMMEMFQEVLTVWK 238
+IYDVREEI++FF A+RELM+EMFQEVL+VWK
Sbjct: 292 KIYDVREEISSFFRQADRELMLEMFQEVLSVWK 324
>ref|NP_175972.1| hypothetical protein; protein id: At1g55760.1 [Arabidopsis
thaliana]
Length = 329
Score = 113 bits (282), Expect(2) = 5e-30
Identities = 55/96 (57%), Positives = 70/96 (72%)
Frame = -2
Query: 626 EKETSTIHMEDMSQQSCKALLSYLYGTIKHEDFWKHRLALLGAANKFEIGDLKDACEESL 447
EKE S I++ DM +C+A LSY+YG I++EDF HRLALL AA K++I DLK+AC SL
Sbjct: 199 EKELSEINVLDMPLDACQAFLSYIYGNIQNEDFLIHRLALLQAAEKYDIADLKEACHLSL 258
Query: 446 LDDLTSGNVLSRLNEAWLYQLPQLKKGCFTFLFDFG 339
LDD+ + NVL RL A+LYQLP+LK C +L FG
Sbjct: 259 LDDIDTKNVLERLQNAYLYQLPELKASCMRYLVKFG 294
Score = 40.0 bits (92), Expect(2) = 5e-30
Identities = 16/35 (45%), Positives = 26/35 (73%)
Frame = -1
Query: 336 QIYDVREEINNFFLLAERELMMEMFQEVLTVWK*F 232
+I+++R+E N F A+R+L+ E+F EVL+ WK F
Sbjct: 295 KIFEIRDEFNIFMQCADRDLISEIFHEVLSTWKGF 329
>gb|AAF79503.1|AC002328_11 F20N2.15 [Arabidopsis thaliana]
Length = 979
Score = 109 bits (272), Expect = 3e-23
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = -2
Query: 626 EKETSTIHMEDMSQQSCKALLSYLYGTIKHEDFWKHRLALLGAANKFEIGDLKDACEESL 447
EKE S I++ DM +C+A LSY+YG I++EDF HRLALL AA K++I DLK+AC SL
Sbjct: 199 EKELSEINVLDMPLDACQAFLSYIYGNIQNEDFLIHRLALLQAAEKYDIADLKEACHLSL 258
Query: 446 LDDLTSGNVLSRLNEAWLYQLPQLKKGCFTFL 351
LDD+ + NVL RL A+LYQLP+LK C +L
Sbjct: 259 LDDIDTKNVLERLQNAYLYQLPELKASCMRYL 290
>ref|NP_492449.2| Maternal Effect embryonic Lethal MEL-26, speckle-type POZ protein
Spop, postmeiotic negative regulator of meiotic-specific
spindle component MEI-1 (44.5 kD) (mel-26)
[Caenorhabditis elegans] gi|1526968|gb|AAC63596.1|
MEL-26 [Caenorhabditis elegans]
gi|20338976|emb|CAB02139.2| C. elegans MEL-26 protein
(corresponding sequence ZK858.4) [Caenorhabditis
elegans]
Length = 395
Score = 50.8 bits (120), Expect = 1e-05
Identities = 28/93 (30%), Positives = 51/93 (54%)
Frame = -2
Query: 629 DEKETSTIHMEDMSQQSCKALLSYLYGTIKHEDFWKHRLALLGAANKFEIGDLKDACEES 450
DE ++S +++ DM ++ Y+Y ++D ALL AA+K+ + +LK CE+
Sbjct: 236 DEAKSSMMYINDMDYDVIYEMVYYIYCGRCNKDITDMATALLIAADKYRLEELKSHCEKY 295
Query: 449 LLDDLTSGNVLSRLNEAWLYQLPQLKKGCFTFL 351
L++++ N S L LY P+L+K T++
Sbjct: 296 LVENINIENACSLLIIGDLYSAPKLRKRAVTYI 328
>ref|NP_181577.1| hypothetical protein; protein id: At2g40450.1 [Arabidopsis
thaliana] gi|25408703|pir||F84829 hypothetical protein
At2g40450 [imported] - Arabidopsis thaliana
gi|2651311|gb|AAB87591.1| hypothetical protein
[Arabidopsis thaliana]
Length = 209
Score = 49.3 bits (116), Expect = 4e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = -2
Query: 623 KETSTIHMEDMSQQSCKALLSYLY---GTIKHEDFWKHRLALLGAANKFEIGDLKDACEE 453
K+ T+ + +M + +A + ++Y G+I KH +L AA+K+EI L+D C
Sbjct: 67 KQMETVTLSEMKHEELEAFVEFIYRVDGSICSASLKKHARSLFHAADKYEIPHLRDLCRN 126
Query: 452 SLLDDLTSGNVLSRLNEAWLYQLP 381
L+ L S N LS L L Q+P
Sbjct: 127 ELISSLNSSNALSILE---LAQIP 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,570,228
Number of Sequences: 1393205
Number of extensions: 11579902
Number of successful extensions: 30759
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 29779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30727
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
