Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001894A_C01 KMC001894A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB60678.1| geranylgeranyl diphosphate synthase [Hevea brasi... 201 5e-51
dbj|BAA86284.1| geranylgeranyl pyrophosphate synthase [Croton su... 199 2e-50
dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia ... 194 5e-49
gb|AAA32797.1| geranylgeranyl pyrophosphate synthase 194 8e-49
ref|NP_195399.1| geranylgeranyl pyrophosphate synthase (GGPS1)(f... 194 8e-49
>dbj|BAB60678.1| geranylgeranyl diphosphate synthase [Hevea brasiliensis]
Length = 370
Score = 201 bits (511), Expect = 5e-51
Identities = 102/116 (87%), Positives = 111/116 (94%)
Frame = -1
Query: 567 KTAVLLEASVVLGAIMGGGSDEEVERLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGK 388
KTA LLE +VVLGAI+GGG+DEEVE+LRK+AR IGLLFQVVDDILDVTKSS+ELGKTAGK
Sbjct: 255 KTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGK 314
Query: 387 DLVADKVTYPKLLGIEKSKEFAAKLNKEAHKQLAGFDPEKAAPLLALANYIAHRQN 220
DLVADKVTYPKLLGIEKS+EFA KLNKEA +QLAGFDPEKAAPL+ALANYIAHRQN
Sbjct: 315 DLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
>dbj|BAA86284.1| geranylgeranyl pyrophosphate synthase [Croton sublyratus]
Length = 368
Score = 199 bits (506), Expect = 2e-50
Identities = 101/116 (87%), Positives = 111/116 (95%)
Frame = -1
Query: 567 KTAVLLEASVVLGAIMGGGSDEEVERLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGK 388
KTA LLE +VVLGAIMGGG+DEEVE+LRK+AR IGLLFQVVDDILDVTKSS+ELGKTAGK
Sbjct: 253 KTAKLLEGAVVLGAIMGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGK 312
Query: 387 DLVADKVTYPKLLGIEKSKEFAAKLNKEAHKQLAGFDPEKAAPLLALANYIAHRQN 220
DLVADKVTYPKL+GIEKS+EFA KLNKEA +QLAGFDPEKAAPL+ALANYIA+RQN
Sbjct: 313 DLVADKVTYPKLMGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAYRQN 368
>dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia dulcis]
Length = 351
Score = 194 bits (494), Expect = 5e-49
Identities = 97/116 (83%), Positives = 108/116 (92%)
Frame = -1
Query: 567 KTAVLLEASVVLGAIMGGGSDEEVERLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGK 388
KTA LLE SVVLGAI+GGG+DEEVERLRKFARCIGLLFQVVDDILDVTK+S ELGKTAGK
Sbjct: 236 KTAALLEGSVVLGAILGGGNDEEVERLRKFARCIGLLFQVVDDILDVTKTSVELGKTAGK 295
Query: 387 DLVADKVTYPKLLGIEKSKEFAAKLNKEAHKQLAGFDPEKAAPLLALANYIAHRQN 220
DLVADK TYPKL+GIEKS+EFA KLN+EA +QL GFD +KAAPL+ALANYIA+R+N
Sbjct: 296 DLVADKTTYPKLIGIEKSREFAEKLNREAQEQLVGFDSDKAAPLIALANYIAYREN 351
>gb|AAA32797.1| geranylgeranyl pyrophosphate synthase
Length = 371
Score = 194 bits (492), Expect = 8e-49
Identities = 95/116 (81%), Positives = 108/116 (92%)
Frame = -1
Query: 567 KTAVLLEASVVLGAIMGGGSDEEVERLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGK 388
KTA LLEAS VLGAI+GGGSD+E+ERLRKFARCIGLLFQVVDDILDVTKSS+ELGKTAGK
Sbjct: 256 KTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGK 315
Query: 387 DLVADKVTYPKLLGIEKSKEFAAKLNKEAHKQLAGFDPEKAAPLLALANYIAHRQN 220
DL+ADK+TYPK++G+EKS+EFA KLN+EA QL GFD +K APLLALANYIA+RQN
Sbjct: 316 DLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
>ref|NP_195399.1| geranylgeranyl pyrophosphate synthase
(GGPS1)(farnesyltranstransferase); protein id:
At4g36810.1, supported by cDNA: 36701., supported by
cDNA: gi_413729 [Arabidopsis thaliana]
gi|13432144|sp|P34802|GGPP_ARATH Geranylgeranyl
pyrophosphate synthetase, chloroplast precursor (GGPP
synthetase) (GGPS) [Includes: Dimethylallyltransferase ;
Geranyltranstransferase ; Farnesyltranstransferase ]
gi|25313385|pir||F85434 geranylgeranyl pyrophosphate
synthase [imported] - Arabidopsis thaliana
gi|2464899|emb|CAB16803.1| geranylgeranyl pyrophosphate
synthase [Arabidopsis thaliana]
gi|7270630|emb|CAB80347.1| geranylgeranyl pyrophosphate
synthase [Arabidopsis thaliana]
Length = 371
Score = 194 bits (492), Expect = 8e-49
Identities = 95/116 (81%), Positives = 108/116 (92%)
Frame = -1
Query: 567 KTAVLLEASVVLGAIMGGGSDEEVERLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGK 388
KTA LLEAS VLGAI+GGGSD+E+ERLRKFARCIGLLFQVVDDILDVTKSS+ELGKTAGK
Sbjct: 256 KTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGK 315
Query: 387 DLVADKVTYPKLLGIEKSKEFAAKLNKEAHKQLAGFDPEKAAPLLALANYIAHRQN 220
DL+ADK+TYPK++G+EKS+EFA KLN+EA QL GFD +K APLLALANYIA+RQN
Sbjct: 316 DLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,797,929
Number of Sequences: 1393205
Number of extensions: 11288885
Number of successful extensions: 40722
Number of sequences better than 10.0: 529
Number of HSP's better than 10.0 without gapping: 36579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40172
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
