Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001892A_C01 KMC001892A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65946.1| unknown [Arabidopsis thaliana] 93 3e-18
gb|AAK68776.1| Unknown protein [Arabidopsis thaliana] gi|1837756... 93 3e-18
ref|NP_564222.1| expressed protein; protein id: At1g24610.1, sup... 93 3e-18
ref|NP_500772.1| Protein kinase family member [Caenorhabditis el... 36 0.41
gb|AAO51310.1| similar to Homo sapiens (Human). Tuftelin interac... 35 0.90
>gb|AAM65946.1| unknown [Arabidopsis thaliana]
Length = 471
Score = 92.8 bits (229), Expect = 3e-18
Identities = 44/65 (67%), Positives = 58/65 (88%)
Frame = -1
Query: 585 ALCVIALGHFPSQIADDESLLKQGAPGSTELAIQFRMQKKSVIIDVVRDLSRRVKLLSSK 406
ALCVIAL HFP++I +DE+++KQG + EL+I++R+QKKSVIIDV++DL+RRVKLLSSK
Sbjct: 406 ALCVIALSHFPTKIMEDEAIIKQGVSATAELSIKYRIQKKSVIIDVMKDLTRRVKLLSSK 465
Query: 405 ETVTA 391
ET TA
Sbjct: 466 ETPTA 470
>gb|AAK68776.1| Unknown protein [Arabidopsis thaliana] gi|18377562|gb|AAL66947.1|
unknown protein [Arabidopsis thaliana]
Length = 364
Score = 92.8 bits (229), Expect = 3e-18
Identities = 44/65 (67%), Positives = 58/65 (88%)
Frame = -1
Query: 585 ALCVIALGHFPSQIADDESLLKQGAPGSTELAIQFRMQKKSVIIDVVRDLSRRVKLLSSK 406
ALCVIAL HFP++I +DE+++KQG + EL+I++R+QKKSVIIDV++DL+RRVKLLSSK
Sbjct: 299 ALCVIALSHFPTKIMEDEAIIKQGVSATAELSIKYRIQKKSVIIDVMKDLTRRVKLLSSK 358
Query: 405 ETVTA 391
ET TA
Sbjct: 359 ETPTA 363
>ref|NP_564222.1| expressed protein; protein id: At1g24610.1, supported by cDNA:
6503. [Arabidopsis thaliana]
gi|9743350|gb|AAF97974.1|AC000103_24 F21J9.27
[Arabidopsis thaliana]
Length = 476
Score = 92.8 bits (229), Expect = 3e-18
Identities = 44/65 (67%), Positives = 58/65 (88%)
Frame = -1
Query: 585 ALCVIALGHFPSQIADDESLLKQGAPGSTELAIQFRMQKKSVIIDVVRDLSRRVKLLSSK 406
ALCVIAL HFP++I +DE+++KQG + EL+I++R+QKKSVIIDV++DL+RRVKLLSSK
Sbjct: 411 ALCVIALSHFPTKIMEDEAIIKQGVSATAELSIKYRIQKKSVIIDVMKDLTRRVKLLSSK 470
Query: 405 ETVTA 391
ET TA
Sbjct: 471 ETPTA 475
>ref|NP_500772.1| Protein kinase family member [Caenorhabditis elegans]
gi|7511099|pir||T25989 hypothetical protein ZK354.6 -
Caenorhabditis elegans gi|1825640|gb|AAB42262.1|
Hypothetical protein ZK354.6 [Caenorhabditis elegans]
Length = 368
Score = 35.8 bits (81), Expect = 0.41
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 130 KSDKRILKGEKKSIRKKQKREENKEKDNVGGGEGNKIWNEI 252
K D+ K EKK + K+K +E KEK N+ G N++ N I
Sbjct: 17 KDDESKKKDEKKEEKSKRKEDEKKEKQNIAGAVYNQMRNTI 57
>gb|AAO51310.1| similar to Homo sapiens (Human). Tuftelin interacting protein 11
[Dictyostelium discoideum]
Length = 883
Score = 34.7 bits (78), Expect = 0.90
Identities = 16/45 (35%), Positives = 28/45 (61%)
Frame = +1
Query: 130 KSDKRILKGEKKSIRKKQKREENKEKDNVGGGEGNKIWNEIHDSS 264
K ++ K +KK +K++K ++NK+K+ GGG GN + +D S
Sbjct: 88 KKKEKKEKKQKKKEKKEKKEKKNKKKNKYGGGGGNNYDDSDNDKS 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,860,928
Number of Sequences: 1393205
Number of extensions: 9231082
Number of successful extensions: 38117
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 34141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37536
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
