Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001890A_C01 KMC001890A_c01
(1299 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198881.1| succinate dehydrogenase iron-protein subunit -l... 414 e-114
gb|AAM65047.1| succinate dehydrogenase iron-protein subunit-like... 413 e-114
emb|CAC19856.1| mitochondrial succinate dehydrogenase iron-sulph... 411 e-113
ref|NP_189374.1| succinate dehydrogenase iron-protein subunit, p... 410 e-113
emb|CAC19855.1| mitochondrial succinate dehydrogenase iron-sulph... 409 e-113
>ref|NP_198881.1| succinate dehydrogenase iron-protein subunit -like; protein id:
At5g40650.1, supported by cDNA: 36094., supported by
cDNA: gi_18377691 [Arabidopsis thaliana]
gi|9758093|dbj|BAB08537.1| succinate dehydrogenase
iron-protein subunit [Arabidopsis thaliana]
gi|18377692|gb|AAL66996.1| putative succinate
dehydrogenase iron-protein subunit [Arabidopsis thaliana]
gi|21689851|gb|AAM67569.1| putative succinate
dehydrogenase iron-protein subunit [Arabidopsis thaliana]
Length = 280
Score = 414 bits (1063), Expect = e-114
Identities = 200/264 (75%), Positives = 220/264 (82%)
Frame = -1
Query: 1170 RLALLRAHASETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVL 991
RL R ++ ++AQ +K FQIYRWNP+NP KPEL++Y I+LKDCGPMVL
Sbjct: 22 RLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDNPGKPELQDYKIDLKDCGPMVL 81
Query: 990 DALIKIKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMF 811
DALIKIKNE+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I S +KETT+TPLPHMF
Sbjct: 82 DALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLPHMF 141
Query: 810 VIKDLVVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCST 631
VIKDLVVDMTNFY QYKSIEPWLKRK+P VPGKEILQSKKDR KLDGMYECILCACCST
Sbjct: 142 VIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCST 201
Query: 630 SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTHIELCSCLR 451
SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT + C+
Sbjct: 202 SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILN-CARAC 260
Query: 450 PSGLNPWKANPTDQVSSAKSLKFS 379
P GLNP K Q++ K L+ S
Sbjct: 261 PKGLNPGK-----QITHIKQLQKS 279
>gb|AAM65047.1| succinate dehydrogenase iron-protein subunit-like [Arabidopsis
thaliana]
Length = 280
Score = 413 bits (1062), Expect = e-114
Identities = 200/264 (75%), Positives = 219/264 (82%)
Frame = -1
Query: 1170 RLALLRAHASETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVL 991
RL R + ++AQ +K FQIYRWNP+NP KPEL++Y I+LKDCGPMVL
Sbjct: 22 RLIPARWTSKGSEAQSKASTGGGGASLKTFQIYRWNPDNPGKPELQDYKIDLKDCGPMVL 81
Query: 990 DALIKIKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMF 811
DALIKIKNE+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I S +KETT+TPLPHMF
Sbjct: 82 DALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLPHMF 141
Query: 810 VIKDLVVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCST 631
VIKDLVVDMTNFY QYKSIEPWLKRK+P VPGKEILQSKKDR KLDGMYECILCACCST
Sbjct: 142 VIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCST 201
Query: 630 SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTHIELCSCLR 451
SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT + C+
Sbjct: 202 SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILN-CARAC 260
Query: 450 PSGLNPWKANPTDQVSSAKSLKFS 379
P GLNP K Q++ K L+ S
Sbjct: 261 PKGLNPGK-----QITHIKQLQKS 279
>emb|CAC19856.1| mitochondrial succinate dehydrogenase iron-sulphur subunit
[Arabidopsis thaliana]
Length = 280
Score = 411 bits (1056), Expect = e-113
Identities = 199/264 (75%), Positives = 218/264 (82%)
Frame = -1
Query: 1170 RLALLRAHASETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVL 991
RL R + ++AQ +K FQIYRWNP+NP KPEL++Y I+LKDCGPMVL
Sbjct: 22 RLIPARWTSKGSEAQSKASTGGGGASLKTFQIYRWNPDNPGKPELQDYKIDLKDCGPMVL 81
Query: 990 DALIKIKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMF 811
DALIKIKNE+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I +KETT+TPLPHMF
Sbjct: 82 DALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIEFGSKETTITPLPHMF 141
Query: 810 VIKDLVVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCST 631
VIKDLVVDMTNFY QYKSIEPWLKRK+P VPGKEILQSKKDR KLDGMYECILCACCST
Sbjct: 142 VIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCST 201
Query: 630 SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTHIELCSCLR 451
SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT + C+
Sbjct: 202 SCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILN-CARAC 260
Query: 450 PSGLNPWKANPTDQVSSAKSLKFS 379
P GLNP K Q++ K L+ S
Sbjct: 261 PKGLNPGK-----QITHIKQLQKS 279
>ref|NP_189374.1| succinate dehydrogenase iron-protein subunit, putative; protein id:
At3g27380.1, supported by cDNA: 2924., supported by cDNA:
gi_14334679, supported by cDNA: gi_17104676 [Arabidopsis
thaliana] gi|7939510|dbj|BAA95713.1| succinate
dehydrogenase iron-protein subunit [Arabidopsis thaliana]
gi|14334680|gb|AAK59518.1| putative succinate
dehydrogenase iron-protein subunit [Arabidopsis thaliana]
gi|17104677|gb|AAL34227.1| putative succinate
dehydrogenase iron-protein subunit [Arabidopsis thaliana]
Length = 279
Score = 410 bits (1053), Expect = e-113
Identities = 201/263 (76%), Positives = 219/263 (82%), Gaps = 4/263 (1%)
Frame = -1
Query: 1161 LLRAHASETQAQQVEPKASET----TRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMV 994
L+ A + T A+ E KAS + +K FQIYRWNP+NP KPEL+ Y I+LKDCGPMV
Sbjct: 23 LIPARWTSTGAE-AETKASSGGGRGSNLKTFQIYRWNPDNPGKPELQNYQIDLKDCGPMV 81
Query: 993 LDALIKIKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHM 814
LDALIKIKNE+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I EA ETT+TPLPHM
Sbjct: 82 LDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLPHM 141
Query: 813 FVIKDLVVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCS 634
FVIKDLVVDMTNFY QYKSIEPWLKRK+P VP KEILQSKKDR KLDGMYECILCACCS
Sbjct: 142 FVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCS 201
Query: 633 TSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTHIELCSCL 454
TSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT + C+
Sbjct: 202 TSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILN-CARA 260
Query: 453 RPSGLNPWKANPTDQVSSAKSLK 385
P GLNP K Q++ K L+
Sbjct: 261 CPKGLNPGK-----QITHIKQLQ 278
>emb|CAC19855.1| mitochondrial succinate dehydrogenase iron-sulphur subunit
[Arabidopsis thaliana]
Length = 279
Score = 409 bits (1052), Expect = e-113
Identities = 197/251 (78%), Positives = 213/251 (84%), Gaps = 4/251 (1%)
Frame = -1
Query: 1125 QVEPKASET----TRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVLDALIKIKNEVD 958
+ E KAS + +K FQIYRWNP+NP KPEL+ Y I+LKDCGPMVLDALIKIKNE+D
Sbjct: 34 EAETKASSGGGRGSNLKTFQIYRWNPDNPGKPELQNYQIDLKDCGPMVLDALIKIKNEMD 93
Query: 957 QTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDLVVDMTN 778
+LTFRRSCREGICGSCAMNIDGCNGLACLT+I EA ETT+TPLPHMFVIKDLVVDMTN
Sbjct: 94 PSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLPHMFVIKDLVVDMTN 153
Query: 777 FYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSYWWNPES 598
FY QYKSIEPWLKRK+P VP KEILQSKKDR KLDGMYECILCACCSTSCPSYWWNPES
Sbjct: 154 FYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPES 213
Query: 597 YLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTHIELCSCLRPSGLNPWKANP 418
YLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT + C+ P GLNP K
Sbjct: 214 YLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILN-CARACPKGLNPGK--- 269
Query: 417 TDQVSSAKSLK 385
Q++ K L+
Sbjct: 270 --QITHIKQLQ 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,215,204,607
Number of Sequences: 1393205
Number of extensions: 29999620
Number of successful extensions: 177288
Number of sequences better than 10.0: 481
Number of HSP's better than 10.0 without gapping: 129772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166258
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 83582497602
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
