Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001889A_C01 KMC001889A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564342.1| unknown protein; protein id: At1g29950.1 [Arabi... 62 5e-09
pir||C86423 unknown protein, 14666-16092 [imported] - Arabidopsi... 62 5e-09
dbj|BAB19078.1| P0006C01.20 [Oryza sativa (japonica cultivar-gro... 59 4e-08
gb|AAN78308.1| putative bHLH transcription factor [Arabidopsis t... 43 0.003
ref|NP_179608.1| unknown protein; protein id: At2g20180.1 [Arabi... 43 0.003
>ref|NP_564342.1| unknown protein; protein id: At1g29950.1 [Arabidopsis thaliana]
gi|13605563|gb|AAK32775.1|AF361607_1 F1N18.24/F1N18.24
[Arabidopsis thaliana] gi|18491145|gb|AAL69541.1|
F1N18.24/F1N18.24 [Arabidopsis thaliana]
Length = 251
Score = 62.4 bits (150), Expect = 5e-09
Identities = 41/98 (41%), Positives = 60/98 (60%), Gaps = 7/98 (7%)
Frame = -3
Query: 613 REICESTSDTC-SSYC------SKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKNMVRM 455
R+ +T+++C SSY + SRK+ LS S+ ++ +G +MK M+ +
Sbjct: 156 RDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSASSSNNDGKG-------RKKMKKMMGV 208
Query: 454 LRRIVPGGGSQVDAVSVLDEAVKYLKSLKAEVEQFGVG 341
LRRIVPGG Q++ VLDEAV+YLKSLK E ++ GVG
Sbjct: 209 LRRIVPGG-EQMNTACVLDEAVQYLKSLKIEAQKLGVG 245
>pir||C86423 unknown protein, 14666-16092 [imported] - Arabidopsis thaliana
gi|9972351|gb|AAG10601.1|AC008030_1 Unknown protein
[Arabidopsis thaliana]
gi|12324164|gb|AAG52051.1|AC022455_5 unknown protein;
14666-16092 [Arabidopsis thaliana]
Length = 285
Score = 62.4 bits (150), Expect = 5e-09
Identities = 41/98 (41%), Positives = 60/98 (60%), Gaps = 7/98 (7%)
Frame = -3
Query: 613 REICESTSDTC-SSYC------SKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKNMVRM 455
R+ +T+++C SSY + SRK+ LS S+ ++ +G +MK M+ +
Sbjct: 190 RDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSASSSNNDGKG-------RKKMKKMMGV 242
Query: 454 LRRIVPGGGSQVDAVSVLDEAVKYLKSLKAEVEQFGVG 341
LRRIVPGG Q++ VLDEAV+YLKSLK E ++ GVG
Sbjct: 243 LRRIVPGG-EQMNTACVLDEAVQYLKSLKIEAQKLGVG 279
>dbj|BAB19078.1| P0006C01.20 [Oryza sativa (japonica cultivar-group)]
gi|11761109|dbj|BAB19099.1| P0688A04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 262
Score = 59.3 bits (142), Expect = 4e-08
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = -3
Query: 604 CESTSDTCSSYCSKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKNMVRMLRRIVPGGGS 425
C + SS +SRK SSS +SS G ++ T H M+NMV +LR I+PGG
Sbjct: 176 CFESDSLDSSSPPRSRKMHHSSS---QSSVFHGSMDTVT-HERMRNMVTVLRGIIPGG-D 230
Query: 424 QVDAVSVLDEAVKYLKSLKAEVEQFGV 344
Q+D SV++EAV+YLK LK E ++ GV
Sbjct: 231 QLDTASVIEEAVRYLKFLKMEAKKLGV 257
>gb|AAN78308.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|28372351|dbj|BAC56979.1| PIF3 like basic Helix Loop
Helix protein [Arabidopsis thaliana]
Length = 478
Score = 43.1 bits (100), Expect = 0.003
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = -3
Query: 598 STSDTCSSYCSKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKN-MVRMLRRIVPGGGSQ 422
+T+D S ++++ R+S++S ++S + SE + N ++ L+ ++P
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 317
Query: 421 VDAVSVLDEAVKYLKSLKAEVEQFGVG 341
D S+LDEA++Y+KSL+ +++ +G
Sbjct: 318 -DKASMLDEAIEYMKSLQLQIQMMSMG 343
>ref|NP_179608.1| unknown protein; protein id: At2g20180.1 [Arabidopsis thaliana]
gi|25411969|pir||A84586 hypothetical protein At2g20180
[imported] - Arabidopsis thaliana
gi|4580456|gb|AAD24380.1| unknown protein [Arabidopsis
thaliana]
Length = 490
Score = 43.1 bits (100), Expect = 0.003
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = -3
Query: 598 STSDTCSSYCSKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKN-MVRMLRRIVPGGGSQ 422
+T+D S ++++ R+S++S ++S + SE + N ++ L+ ++P
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 317
Query: 421 VDAVSVLDEAVKYLKSLKAEVEQFGVG 341
D S+LDEA++Y+KSL+ +++ +G
Sbjct: 318 -DKASMLDEAIEYMKSLQLQIQMMSMG 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,665,238
Number of Sequences: 1393205
Number of extensions: 11213618
Number of successful extensions: 33598
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 32098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33497
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
