Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001888A_C01 KMC001888A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB18323.1| P0034C11.13 [Oryza sativa (japonica cultivar-gro... 115 4e-25
gb|AAO42083.1| unknown protein [Arabidopsis thaliana] 110 8e-24
pir||D96649 hypothetical protein F19K23.20 [imported] - Arabidop... 110 8e-24
ref|NP_176418.1| hypothetical protein; protein id: At1g62280.1 [... 110 8e-24
gb|AAD38287.1|AC007789_13 unknown protein [Oryza sativa (japonic... 74 1e-12
>dbj|BAB18323.1| P0034C11.13 [Oryza sativa (japonica cultivar-group)]
gi|13486852|dbj|BAB40083.1| OSJNBa0004G10.32 [Oryza
sativa (japonica cultivar-group)]
Length = 374
Score = 115 bits (287), Expect = 4e-25
Identities = 55/89 (61%), Positives = 72/89 (80%)
Frame = -2
Query: 524 KMLFFLSFFLFMSLVSRPLLFKKSMKKFNVAWWAYSFPLTALALASAEYAHQVKGLTAHA 345
KMLFFLS FLF SLVSRP LFK++M++F+VAWWAYSFPLT LALA+AEYA +V+ + A
Sbjct: 274 KMLFFLSLFLFASLVSRPTLFKRAMRRFSVAWWAYSFPLTVLALAAAEYAQEVREVAASV 333
Query: 344 VMLVLSLISVLVSVVLMIVTALNTSIPLP 258
+ML L+++SV V++ LM+ T L T+ LP
Sbjct: 334 LMLALAILSVAVTLALMVFTVLRTNDLLP 362
Score = 31.2 bits (69), Expect = 7.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 500 FLFMSLVSRPLLFKKSMKKFNVAWWAYSFPLTAL 399
+L + + PLL + + + WWA+S P+ AL
Sbjct: 132 WLLLLQAAPPLLLRPDARPYRALWWAFSLPILAL 165
>gb|AAO42083.1| unknown protein [Arabidopsis thaliana]
Length = 385
Score = 110 bits (276), Expect = 8e-24
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = -2
Query: 524 KMLFFLSFFLFMSLVSRPLLFKKSMKKFNVAWWAYSFPLTALALASAEYAHQVKGLTAHA 345
KMLFFLS F+FMSLV RP LFKKSMK+FNVAWWAYSFPLT LAL S +YA +VK
Sbjct: 271 KMLFFLSLFIFMSLVCRPNLFKKSMKRFNVAWWAYSFPLTFLALDSVQYAQEVKDPVGSG 330
Query: 344 VMLVLSLISVLVSVVLMIVTALNTS 270
+ML+ S ISVL+ + +M++TA N++
Sbjct: 331 LMLIFSSISVLIFLGMMVLTAANSN 355
>pir||D96649 hypothetical protein F19K23.20 [imported] - Arabidopsis thaliana
gi|2160150|gb|AAB60772.1| EST gb|T43829 comes from this
gene. [Arabidopsis thaliana]
Length = 366
Score = 110 bits (276), Expect = 8e-24
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = -2
Query: 524 KMLFFLSFFLFMSLVSRPLLFKKSMKKFNVAWWAYSFPLTALALASAEYAHQVKGLTAHA 345
KMLFFLS F+FMSLV RP LFKKSMK+FNVAWWAYSFPLT LAL S +YA +VK
Sbjct: 252 KMLFFLSLFIFMSLVCRPNLFKKSMKRFNVAWWAYSFPLTFLALDSVQYAQEVKDPVGSG 311
Query: 344 VMLVLSLISVLVSVVLMIVTALNTS 270
+ML+ S ISVL+ + +M++TA N++
Sbjct: 312 LMLIFSSISVLIFLGMMVLTAANSN 336
>ref|NP_176418.1| hypothetical protein; protein id: At1g62280.1 [Arabidopsis
thaliana]
Length = 394
Score = 110 bits (276), Expect = 8e-24
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = -2
Query: 524 KMLFFLSFFLFMSLVSRPLLFKKSMKKFNVAWWAYSFPLTALALASAEYAHQVKGLTAHA 345
KMLFFLS F+FMSLV RP LFKKSMK+FNVAWWAYSFPLT LAL S +YA +VK
Sbjct: 271 KMLFFLSLFIFMSLVCRPNLFKKSMKRFNVAWWAYSFPLTFLALDSVQYAQEVKDPVGSG 330
Query: 344 VMLVLSLISVLVSVVLMIVTALNTS 270
+ML+ S ISVL+ + +M++TA N++
Sbjct: 331 LMLIFSSISVLIFLGMMVLTAANSN 355
>gb|AAD38287.1|AC007789_13 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 73.6 bits (179), Expect = 1e-12
Identities = 32/58 (55%), Positives = 48/58 (82%)
Frame = -2
Query: 452 MKKFNVAWWAYSFPLTALALASAEYAHQVKGLTAHAVMLVLSLISVLVSVVLMIVTAL 279
M++F+VAWWAYSFPLT LALA+AEYA +V+ + A +ML L+++SV V++ LM+V ++
Sbjct: 1 MRRFSVAWWAYSFPLTVLALAAAEYAQEVREVAASVLMLALAILSVAVTLALMLVASV 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,905,612
Number of Sequences: 1393205
Number of extensions: 6748126
Number of successful extensions: 13573
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13565
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
