Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001887A_C01 KMC001887A_c01
(350 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199542.1| putative protein; protein id: At5g47310.1 [Arab... 41 0.003
gb|AAK56268.1|AF367279_1 AT4g17486/AT4g17486 [Arabidopsis thalia... 32 1.6
pir||E71444 probable EREBP-4 - Arabidopsis thaliana gi|2245108|e... 32 1.6
gb|AAG40349.1|AF324997_1 AT4g17486 [Arabidopsis thaliana] 32 1.6
ref|NP_567528.1| putative protein; protein id: At4g17486.1, supp... 32 1.6
>ref|NP_199542.1| putative protein; protein id: At5g47310.1 [Arabidopsis thaliana]
gi|8809614|dbj|BAA97165.1| contains similarity to
EREBP-4~gene_id:MQL5.17 [Arabidopsis thaliana]
gi|29029104|gb|AAO64931.1| At5g47310 [Arabidopsis
thaliana]
Length = 245
Score = 41.2 bits (95), Expect = 0.003
Identities = 13/33 (39%), Positives = 28/33 (84%)
Frame = -2
Query: 346 DSEDEGSNHHLLTSPTREVSFISEKPMTLARDL 248
+++ EGS+HHL+T+P +++++ ++P+ LAR+L
Sbjct: 196 ETDGEGSDHHLITAPNSDIAYLQDRPVRLAREL 228
>gb|AAK56268.1|AF367279_1 AT4g17486/AT4g17486 [Arabidopsis thaliana]
gi|15777887|gb|AAL05904.1| AT4g17486/AT4g17486
[Arabidopsis thaliana]
Length = 224
Score = 32.3 bits (72), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = -2
Query: 343 SEDEGSNHHLLTSPTREVSFISEKPMTLARD 251
S++EGS HL+ RE+ ++ KP+ L R+
Sbjct: 191 SDEEGSEQHLINVADREIVYLQNKPVRLTRE 221
>pir||E71444 probable EREBP-4 - Arabidopsis thaliana gi|2245108|emb|CAB10530.1|
EREBP-4 like protein [Arabidopsis thaliana]
gi|7268501|emb|CAB78752.1| EREBP-4 like protein
[Arabidopsis thaliana]
Length = 603
Score = 32.3 bits (72), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = -2
Query: 343 SEDEGSNHHLLTSPTREVSFISEKPMTLARD 251
S++EGS HL+ RE+ ++ KP+ L R+
Sbjct: 570 SDEEGSEQHLINVADREIVYLQNKPVRLTRE 600
>gb|AAG40349.1|AF324997_1 AT4g17486 [Arabidopsis thaliana]
Length = 128
Score = 32.3 bits (72), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = -2
Query: 343 SEDEGSNHHLLTSPTREVSFISEKPMTLARD 251
S++EGS HL+ RE+ ++ KP+ L R+
Sbjct: 95 SDEEGSEQHLINVADREIVYLQNKPVRLTRE 125
>ref|NP_567528.1| putative protein; protein id: At4g17486.1, supported by cDNA:
gi_13358188 [Arabidopsis thaliana]
Length = 128
Score = 32.3 bits (72), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = -2
Query: 343 SEDEGSNHHLLTSPTREVSFISEKPMTLARD 251
S++EGS HL+ RE+ ++ KP+ L R+
Sbjct: 95 SDEEGSEQHLINVADREIVYLQNKPVRLTRE 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,254,678
Number of Sequences: 1393205
Number of extensions: 4887699
Number of successful extensions: 10618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10615
length of database: 448,689,247
effective HSP length: 92
effective length of database: 320,514,387
effective search space used: 7692345288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
