Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001884A_C01 KMC001884A_c01
(374 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_158576.1| hypothetical protein XP_158576 [Mus musculus] 33 1.2
dbj|BAB85047.1| unnamed protein product [Homo sapiens] 32 1.5
pir||G71379 probable chromate transport protein - syphilis spiro... 31 3.4
ref|NP_444312.1| transmembrane 4 superfamily member 7; tetraspan... 31 3.4
ref|XP_215114.1| similar to transmembrane 4 superfamily member 7... 31 3.4
>ref|XP_158576.1| hypothetical protein XP_158576 [Mus musculus]
Length = 407
Score = 32.7 bits (73), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -3
Query: 312 AACHCCHSGVRWMLICTLFGVVIFLFLSC 226
A H CH V WML+C VV+++ SC
Sbjct: 188 AMTHICHPVVLWMLMCICHPVVLWMLWSC 216
>dbj|BAB85047.1| unnamed protein product [Homo sapiens]
Length = 776
Score = 32.3 bits (72), Expect = 1.5
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 155 TSALSLSHSXLNL-CRLVTPNRPKTQERNR-KITTPNNVQISIHLTPLWQQ*HAAIHPHH 328
T + ++ S L L C + T +P+TQ+ + ++ P VQ+ + + QQ A + P
Sbjct: 64 TDSTEVAGSLLELACPVTTSVQPQTQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQL 123
Query: 329 SKHKPFKQ 352
+ H+P +Q
Sbjct: 124 TVHQPTEQ 131
>pir||G71379 probable chromate transport protein - syphilis spirochete
Length = 456
Score = 31.2 bits (69), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -3
Query: 279 WMLICTLFGVVIFLFLSCVFGLLGVTSLHRFS 184
W +CT GVV FL VF +G+ SLH ++
Sbjct: 156 WGALCTTLGVVTPSFLIIVFLAVGIRSLHTYA 187
>ref|NP_444312.1| transmembrane 4 superfamily member 7; tetraspanin 4; novel antigen
2; tetraspan TM4SF [Mus musculus]
gi|20140784|sp|Q9DCK3|T4S7_MOUSE Transmembrane 4
superfamily, member 7 gi|12832892|dbj|BAB22301.1|
unnamed protein product [Mus musculus]
gi|13097504|gb|AAH03482.1| solute carrier family 25
(mitochondrial carrier; peroxisomal membrane protein, 34
kDa), member 17 [Mus musculus]
Length = 238
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/83 (26%), Positives = 31/83 (36%), Gaps = 3/83 (3%)
Frame = -1
Query: 332 CCGVG---EWPHVTVATVE*DGC*SAHCLELLSSCSFPVFLVYWVSPVCTDLVXSERERE 162
CCGV +W V AT D C CLE SC +W SP + +E
Sbjct: 147 CCGVSNYTDWFEVYNATRVPDSC----CLEFSDSCGLHEPGTWWKSPCYETVKAWLQENL 202
Query: 161 RRFSFFNFSKIIFEVQGFVFCVS 93
F + ++ G F ++
Sbjct: 203 LAVGIFGLCTALVQILGLTFAMT 225
>ref|XP_215114.1| similar to transmembrane 4 superfamily member 7; tetraspanin 4;
novel antigen 2; tetraspan TM4SF [Mus musculus] [Rattus
norvegicus]
Length = 174
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/83 (26%), Positives = 31/83 (36%), Gaps = 3/83 (3%)
Frame = -1
Query: 332 CCGVG---EWPHVTVATVE*DGC*SAHCLELLSSCSFPVFLVYWVSPVCTDLVXSERERE 162
CCGV +W V AT D C CLE SC +W SP + +E
Sbjct: 83 CCGVSNYTDWFEVYNATRVPDSC----CLEFSDSCGLHEPGTWWKSPCYETVKAWLQENL 138
Query: 161 RRFSFFNFSKIIFEVQGFVFCVS 93
F + ++ G F ++
Sbjct: 139 LAVGIFGLCTALVQILGLTFAMT 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,332,058
Number of Sequences: 1393205
Number of extensions: 6478715
Number of successful extensions: 18778
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18775
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
