Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001883A_C01 KMC001883A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198949.1| putative protein; protein id: At5g41330.1 [Arab... 133 2e-30
dbj|BAC15824.1| hypothetical protein~similar to Arabidopsis thal... 79 8e-14
ref|NP_187515.1| hypothetical protein; protein id: At3g09030.1 [... 53 3e-06
ref|XP_220593.1| similar to Rho guanine nucleotide exchange fact... 35 0.96
gb|ZP_00043761.1| hypothetical protein [Magnetococcus sp. MC-1] 34 1.6
>ref|NP_198949.1| putative protein; protein id: At5g41330.1 [Arabidopsis thaliana]
gi|9758042|dbj|BAB08505.1|
gb|AAD56319.1~gene_id:MYC6.4~similar to unknown protein
[Arabidopsis thaliana]
Length = 458
Score = 133 bits (335), Expect = 2e-30
Identities = 66/119 (55%), Positives = 86/119 (71%), Gaps = 5/119 (4%)
Frame = -3
Query: 681 FYFDLRNLSAENSWVCLGDKRKVMNGKKEGFGCKIETQGNQVFCS-KGGDVELWSEVLMG 505
FY DLR+L ++ WVCLG+++K ++ G G KIE+ GN VFCS KG +ELWSEV+ G
Sbjct: 336 FYADLRSLGTKDPWVCLGEEKKRNLNERRGVGSKIESYGNHVFCSSKGSGIELWSEVITG 395
Query: 504 NKGGR----LEERIFKKNLMGRVKDMGGAKITNVAFGGSRMFLTRKDQQCVEVWQSSSR 340
G LEER+F+KN +G++ D G KIT +AFGG+RMF+TRKDQQ V+VWQS SR
Sbjct: 396 LVGNASRDVLEERVFRKNSLGKLADSGENKITGLAFGGNRMFVTRKDQQSVQVWQSPSR 454
>dbj|BAC15824.1| hypothetical protein~similar to Arabidopsis thaliana chromosoem 5,
At5g41330 [Oryza sativa (japonica cultivar-group)]
Length = 481
Score = 78.6 bits (192), Expect = 8e-14
Identities = 48/132 (36%), Positives = 73/132 (54%), Gaps = 20/132 (15%)
Frame = -3
Query: 681 FYFDLRNLSAEN----SWVCLGDKRKVMN----GKKEGFGCKIETQGNQVFCSKGGDVEL 526
F DLR L WVC+GD ++ G+KEG GC+IE N VF ++GG+VE+
Sbjct: 344 FMADLRMLGGGGISIEPWVCIGDGQRAAAAASAGRKEGNGCRIECYLNWVFVARGGEVEV 403
Query: 525 WSEVLMGNKGGRLEERIFKKNLMGRVKDM---GGA---------KITNVAFGGSRMFLTR 382
W++V + + G +++ ++N +G GG+ KI + AFGGSRM L R
Sbjct: 404 WTQVELAQEAG--GKKLMRRNWVGNGPSFVIAGGSGHESVKEKTKIVSWAFGGSRMALAR 461
Query: 381 KDQQCVEVWQSS 346
D++ +EVW S+
Sbjct: 462 DDKRSIEVWDSA 473
>ref|NP_187515.1| hypothetical protein; protein id: At3g09030.1 [Arabidopsis
thaliana] gi|5923668|gb|AAD56319.1|AC009326_6
hypothetical protein [Arabidopsis thaliana]
gi|6403485|gb|AAF07825.1|AC010871_1 hypothetical protein
[Arabidopsis thaliana]
Length = 460
Score = 53.1 bits (126), Expect = 3e-06
Identities = 33/111 (29%), Positives = 57/111 (50%), Gaps = 1/111 (0%)
Frame = -3
Query: 672 DLRNLSAENSWVCLGDKRKVMNGKKEGFGCKI-ETQGNQVFCSKGGDVELWSEVLMGNKG 496
D+R L E+ WV + D+ +G G + QV ++GG +E+WS V G
Sbjct: 347 DIRKLG-EDPWVYMSDENPGAWKAGDGGGYSVVHCYRKQVLAARGGALEVWSSVKEKTSG 405
Query: 495 GRLEERIFKKNLMGRVKDMGGAKITNVAFGGSRMFLTRKDQQCVEVWQSSS 343
+ I ++N + + D I+ + GG R+F++R+ + VEVW++SS
Sbjct: 406 ----DPIRRRNFVDKEDDSKRGMISKIEAGGDRLFVSRECMEGVEVWETSS 452
>ref|XP_220593.1| similar to Rho guanine nucleotide exchange factor (GEF) 15; Rho
guanine exchange factor (GEF) 15 [Homo sapiens] [Rattus
norvegicus]
Length = 834
Score = 35.0 bits (79), Expect = 0.96
Identities = 24/60 (40%), Positives = 27/60 (45%)
Frame = +3
Query: 339 P*KNSAKPQHIADPSLSRTSYSLQMQHW*S*HLPCPSPSPSNSS*RSSPPISLPCFPSKP 518
P S KP + PS+SR S Q S P +PSPS S RS P PC P P
Sbjct: 65 PPTGSLKPPALLPPSVSRASLDSQT----SPDSPSSTPSPSPVSRRSISPEPAPCSPVPP 120
>gb|ZP_00043761.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 245
Score = 34.3 bits (77), Expect = 1.6
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -3
Query: 486 EERIFKKNLMGRVKDMGGAKITNVAFGGSRMFLTRKDQQCVEVWQS 349
+++ +++G V+D K+T VA+G + + R +Q V+VWQS
Sbjct: 139 QKQALPDSVLGNVEDFPLQKMTCVAYGDGNLIVYRASEQNVKVWQS 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,675,352
Number of Sequences: 1393205
Number of extensions: 13833337
Number of successful extensions: 45524
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 42388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45204
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
