Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001880A_C01 KMC001880A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67325.1| unknown [Arabidopsis thaliana] 150 1e-35
ref|NP_564161.1| expressed protein; protein id: At1g22170.1, sup... 150 1e-35
gb|AAM53331.1| unknown protein [Arabidopsis thaliana] 150 1e-35
pir||F96809 protein F28K19.26 [imported] - Arabidopsis thaliana ... 140 2e-32
ref|NP_177928.1| phosphoglycerate mutase, putative; protein id: ... 140 2e-32
>gb|AAM67325.1| unknown [Arabidopsis thaliana]
Length = 334
Score = 150 bits (380), Expect = 1e-35
Identities = 72/89 (80%), Positives = 84/89 (93%)
Frame = -3
Query: 629 FRDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFI 450
F+D+IEP+L +GKNVMIAAHGNSLRSIIMYLDKLT QEVISLELSTGIP+LYI KEG+F+
Sbjct: 239 FQDNIEPKLAAGKNVMIAAHGNSLRSIIMYLDKLTCQEVISLELSTGIPLLYIFKEGKFM 298
Query: 449 RRGSPIAPTEAGVYAYTKRLALYKQKLDE 363
+RGSP+ PTEAGVYAYTKRLA Y+QKL++
Sbjct: 299 KRGSPVGPTEAGVYAYTKRLAQYRQKLED 327
>ref|NP_564161.1| expressed protein; protein id: At1g22170.1, supported by cDNA:
33490. [Arabidopsis thaliana] gi|25511655|pir||C86354
phosphoglycerate mutase homolog - Arabidopsis thaliana
gi|9454533|gb|AAF87856.1|AC073942_10 Contains similarity
to a phosphoglyceromutase from Drosophila melanogaster
gi|1092224 and is a member of the phosphoglycerate
mutase family PF|00300. [Arabidopsis thaliana]
Length = 334
Score = 150 bits (380), Expect = 1e-35
Identities = 72/89 (80%), Positives = 84/89 (93%)
Frame = -3
Query: 629 FRDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFI 450
F+D+IEP+L +GKNVMIAAHGNSLRSIIMYLDKLT QEVISLELSTGIP+LYI KEG+F+
Sbjct: 239 FQDNIEPKLAAGKNVMIAAHGNSLRSIIMYLDKLTCQEVISLELSTGIPLLYIFKEGKFM 298
Query: 449 RRGSPIAPTEAGVYAYTKRLALYKQKLDE 363
+RGSP+ PTEAGVYAYTKRLA Y+QKL++
Sbjct: 299 KRGSPVGPTEAGVYAYTKRLAQYRQKLED 327
>gb|AAM53331.1| unknown protein [Arabidopsis thaliana]
Length = 334
Score = 150 bits (380), Expect = 1e-35
Identities = 72/89 (80%), Positives = 84/89 (93%)
Frame = -3
Query: 629 FRDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFI 450
F+D+IEP+L +GKNVMIAAHGNSLRSIIMYLDKLT QEVISLELSTGIP+LYI KEG+F+
Sbjct: 239 FQDNIEPKLAAGKNVMIAAHGNSLRSIIMYLDKLTCQEVISLELSTGIPLLYIFKEGKFM 298
Query: 449 RRGSPIAPTEAGVYAYTKRLALYKQKLDE 363
+RGSP+ PTEAGVYAYTKRLA Y+QKL++
Sbjct: 299 KRGSPVGPTEAGVYAYTKRLAQYRQKLED 327
>pir||F96809 protein F28K19.26 [imported] - Arabidopsis thaliana
gi|6573769|gb|AAF17689.1|AC009243_16 F28K19.26
[Arabidopsis thaliana]
Length = 677
Score = 140 bits (352), Expect = 2e-32
Identities = 66/88 (75%), Positives = 79/88 (89%)
Frame = -3
Query: 629 FRDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFI 450
F D+I+P+L SG NVMIAAHGNSLRSIIMYLD LTSQEV +L+LSTG+P+LYI KEG+F+
Sbjct: 585 FEDNIKPELASGNNVMIAAHGNSLRSIIMYLDDLTSQEVTTLDLSTGVPLLYIFKEGKFM 644
Query: 449 RRGSPIAPTEAGVYAYTKRLALYKQKLD 366
+RGSP+ TEAGVYAYTKRLA Y++KLD
Sbjct: 645 KRGSPVGSTEAGVYAYTKRLAQYREKLD 672
>ref|NP_177928.1| phosphoglycerate mutase, putative; protein id: At1g78050.1
[Arabidopsis thaliana] gi|26451923|dbj|BAC43054.1|
unknown protein [Arabidopsis thaliana]
gi|28372948|gb|AAO39956.1| At1g78050 [Arabidopsis
thaliana]
Length = 195
Score = 140 bits (352), Expect = 2e-32
Identities = 66/88 (75%), Positives = 79/88 (89%)
Frame = -3
Query: 629 FRDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFI 450
F D+I+P+L SG NVMIAAHGNSLRSIIMYLD LTSQEV +L+LSTG+P+LYI KEG+F+
Sbjct: 103 FEDNIKPELASGNNVMIAAHGNSLRSIIMYLDDLTSQEVTTLDLSTGVPLLYIFKEGKFM 162
Query: 449 RRGSPIAPTEAGVYAYTKRLALYKQKLD 366
+RGSP+ TEAGVYAYTKRLA Y++KLD
Sbjct: 163 KRGSPVGSTEAGVYAYTKRLAQYREKLD 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,755,604
Number of Sequences: 1393205
Number of extensions: 11093825
Number of successful extensions: 23579
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 23126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23574
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
