KMC001879A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC001879A_C01 KMC001879A_c01
aattAAAACAATATGTTTTTTCCTTCAGAAAAACAACTTCCTATAAAGCAGATGGCAGAT
CACCTTTTGCATTGTCTCATCATCTAAATGACAATGAACGTGTAGAATGACTACAAAGAT
TGTATAGCAAGACTCAATCTTTAATTACAACTCCCAACTGCTCAAAAACTTCTCTTCTTC
AAAATTAAGCAGAAACATAATACTTATCCGTATAATACTATAAATGTGTGTTTGAGTGTG
TGTGCATGAGAAAGAGAGTCAGATGGGCAACATAGATAGAGACAGCGTTACAAAATCACT
CGATAACTTGAGCACTGGCTGCTTCCATCACTCCATTGCGTATCTGGTCACCAATATCCC
TAACGTGGCCAGGTCCATGGGGGATGAAAATTGTGGTATTCTTTGATGAGTTCCCAAGGT
CTTTGATTGTGTCAAAGTACTGAGTAACCATGATAAGATCCATCACTTCCTTAGCAGAAG
TGCCTTCTACCTTGCCAGAAAAATTCAAGATGTTCTCTCTCAGGCCATCTG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001879A_C01 KMC001879A_c01
         (531 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P16148|PZ12_LUPPO PPLZ12 PROTEIN gi|81843|pir||S14688 hypothe...   142  2e-33
ref|NP_199970.1| putative protein; protein id: At5g51570.1 [Arab...   137  8e-32
gb|AAN17454.1| hypersensitive-induced reaction protein 4 [Hordeu...   127  8e-29
ref|NP_566135.1| expressed protein; protein id: At3g01290.1, sup...   100  8e-21
ref|NP_201080.1| putative protein; protein id: At5g62740.1, supp...   100  1e-20

>sp|P16148|PZ12_LUPPO PPLZ12 PROTEIN gi|81843|pir||S14688 hypothetical protein pPLZ12 -
           large-leaved lupine gi|19501|emb|CAA36070.1| pPLZ12 gene
           product (AA 1-184) [Lupinus polyphyllus]
          Length = 184

 Score =  142 bits (358), Expect = 2e-33
 Identities = 70/81 (86%), Positives = 76/81 (93%), Gaps = 1/81 (1%)
 Frame = -3

Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
           DGLRENILNFS KVEGTSAKEVMDLIM+TQYFDTIKDLGNSSKNTT+FIPHGPGHVRDIG
Sbjct: 101 DGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIG 160

Query: 349 DQIRNGVMEAASAQV-IE*FC 290
           +QIRNG+ME+A A + IE FC
Sbjct: 161 EQIRNGLMESARAGINIERFC 181

>ref|NP_199970.1| putative protein; protein id: At5g51570.1 [Arabidopsis thaliana]
           gi|9758199|dbj|BAB08673.1|
           gb|AAF03497.1~gene_id:K17N15.12~similar to unknown
           protein [Arabidopsis thaliana]
          Length = 292

 Score =  137 bits (345), Expect = 8e-32
 Identities = 64/73 (87%), Positives = 71/73 (96%)
 Frame = -3

Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
           DGLRENILNFS KVEGTSAKEVMDLIM+TQYFDTI+DLGNSSKNTT+F+PHGPGHVRDI 
Sbjct: 214 DGLRENILNFSDKVEGTSAKEVMDLIMITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDIS 273

Query: 349 DQIRNGVMEAASA 311
           DQIRNG+MEAA++
Sbjct: 274 DQIRNGMMEAAAS 286

>gb|AAN17454.1| hypersensitive-induced reaction protein 4 [Hordeum vulgare]
           gi|23345048|gb|AAN17465.1| hypersensitive-induced
           reaction protein 4 [Hordeum vulgare subsp. vulgare]
          Length = 288

 Score =  127 bits (319), Expect = 8e-29
 Identities = 60/73 (82%), Positives = 68/73 (92%)
 Frame = -3

Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
           DGLRENILNFS  V GTSAKEVMDLIMVTQYFDTIK+LG++SK TT+FIPHGPGHV+DIG
Sbjct: 214 DGLRENILNFSHSVSGTSAKEVMDLIMVTQYFDTIKELGDNSKTTTVFIPHGPGHVKDIG 273

Query: 349 DQIRNGVMEAASA 311
           DQIR G+MEA+S+
Sbjct: 274 DQIRTGMMEASSS 286

>ref|NP_566135.1| expressed protein; protein id: At3g01290.1, supported by cDNA:
           108086. [Arabidopsis thaliana]
           gi|6094555|gb|AAF03497.1|AC010676_7 unknown protein
           [Arabidopsis thaliana]
           gi|6714460|gb|AAF26146.1|AC008261_3 unknown protein
           [Arabidopsis thaliana] gi|21536668|gb|AAM61000.1|
           hypersensitive-induced response protein [Arabidopsis
           thaliana]
          Length = 285

 Score =  100 bits (250), Expect = 8e-21
 Identities = 42/73 (57%), Positives = 63/73 (85%)
 Frame = -3

Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
           DGLR+++L F+G V GTSAK+V+D++M+TQYFDT++D+G +SK++ +FIPHGPG V D+ 
Sbjct: 212 DGLRDSVLGFAGNVPGTSAKDVLDMVMMTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVA 271

Query: 349 DQIRNGVMEAASA 311
            QIRNG+++A +A
Sbjct: 272 AQIRNGLLQANNA 284

>ref|NP_201080.1| putative protein; protein id: At5g62740.1, supported by cDNA:
           2641., supported by cDNA: gi_17065547 [Arabidopsis
           thaliana] gi|10177452|dbj|BAB10843.1|
           hypersensitive-induced response protein [Arabidopsis
           thaliana] gi|17065548|gb|AAL32928.1|
           hypersensitive-induced response protein [Arabidopsis
           thaliana] gi|21386975|gb|AAM47891.1|
           hypersensitive-induced response protein [Arabidopsis
           thaliana] gi|21554781|gb|AAM63689.1|
           hypersensitive-induced response protein [Arabidopsis
           thaliana]
          Length = 286

 Score =  100 bits (249), Expect = 1e-20
 Identities = 42/75 (56%), Positives = 64/75 (85%)
 Frame = -3

Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
           DGLR+++L F+  V GT+AK+VMD+++VTQYFDT+K++G SSK++ +FIPHGPG VRD+ 
Sbjct: 212 DGLRDSVLGFAVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVA 271

Query: 349 DQIRNGVMEAASAQV 305
            QIR+G+++ +SA +
Sbjct: 272 SQIRDGLLQGSSANL 286

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,293,659
Number of Sequences: 1393205
Number of extensions: 8935189
Number of successful extensions: 20096
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 19506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20068
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF075c11_f BP032271 1 108
2 GENf040h06 BP060082 5 443
3 SPDL007d08_f BP052411 15 511
4 GENf037d02 BP059935 22 378
5 MWM132f05_f AV766823 45 292
6 MR027d12_f BP078080 55 457
7 MF028b03_f BP029722 55 158
8 GENf022b05 BP059282 56 533
9 MR066g12_f BP081106 102 440
10 SPD001f11_f BP044101 105 319




Lotus japonicus
Kazusa DNA Research Institute