KMC001879A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001879A_C01 KMC001879A_c01
aattAAAACAATATGTTTTTTCCTTCAGAAAAACAACTTCCTATAAAGCAGATGGCAGAT
CACCTTTTGCATTGTCTCATCATCTAAATGACAATGAACGTGTAGAATGACTACAAAGAT
TGTATAGCAAGACTCAATCTTTAATTACAACTCCCAACTGCTCAAAAACTTCTCTTCTTC
AAAATTAAGCAGAAACATAATACTTATCCGTATAATACTATAAATGTGTGTTTGAGTGTG
TGTGCATGAGAAAGAGAGTCAGATGGGCAACATAGATAGAGACAGCGTTACAAAATCACT
CGATAACTTGAGCACTGGCTGCTTCCATCACTCCATTGCGTATCTGGTCACCAATATCCC
TAACGTGGCCAGGTCCATGGGGGATGAAAATTGTGGTATTCTTTGATGAGTTCCCAAGGT
CTTTGATTGTGTCAAAGTACTGAGTAACCATGATAAGATCCATCACTTCCTTAGCAGAAG
TGCCTTCTACCTTGCCAGAAAAATTCAAGATGTTCTCTCTCAGGCCATCTG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001879A_C01 KMC001879A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P16148|PZ12_LUPPO PPLZ12 PROTEIN gi|81843|pir||S14688 hypothe... 142 2e-33
ref|NP_199970.1| putative protein; protein id: At5g51570.1 [Arab... 137 8e-32
gb|AAN17454.1| hypersensitive-induced reaction protein 4 [Hordeu... 127 8e-29
ref|NP_566135.1| expressed protein; protein id: At3g01290.1, sup... 100 8e-21
ref|NP_201080.1| putative protein; protein id: At5g62740.1, supp... 100 1e-20
>sp|P16148|PZ12_LUPPO PPLZ12 PROTEIN gi|81843|pir||S14688 hypothetical protein pPLZ12 -
large-leaved lupine gi|19501|emb|CAA36070.1| pPLZ12 gene
product (AA 1-184) [Lupinus polyphyllus]
Length = 184
Score = 142 bits (358), Expect = 2e-33
Identities = 70/81 (86%), Positives = 76/81 (93%), Gaps = 1/81 (1%)
Frame = -3
Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
DGLRENILNFS KVEGTSAKEVMDLIM+TQYFDTIKDLGNSSKNTT+FIPHGPGHVRDIG
Sbjct: 101 DGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIG 160
Query: 349 DQIRNGVMEAASAQV-IE*FC 290
+QIRNG+ME+A A + IE FC
Sbjct: 161 EQIRNGLMESARAGINIERFC 181
>ref|NP_199970.1| putative protein; protein id: At5g51570.1 [Arabidopsis thaliana]
gi|9758199|dbj|BAB08673.1|
gb|AAF03497.1~gene_id:K17N15.12~similar to unknown
protein [Arabidopsis thaliana]
Length = 292
Score = 137 bits (345), Expect = 8e-32
Identities = 64/73 (87%), Positives = 71/73 (96%)
Frame = -3
Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
DGLRENILNFS KVEGTSAKEVMDLIM+TQYFDTI+DLGNSSKNTT+F+PHGPGHVRDI
Sbjct: 214 DGLRENILNFSDKVEGTSAKEVMDLIMITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDIS 273
Query: 349 DQIRNGVMEAASA 311
DQIRNG+MEAA++
Sbjct: 274 DQIRNGMMEAAAS 286
>gb|AAN17454.1| hypersensitive-induced reaction protein 4 [Hordeum vulgare]
gi|23345048|gb|AAN17465.1| hypersensitive-induced
reaction protein 4 [Hordeum vulgare subsp. vulgare]
Length = 288
Score = 127 bits (319), Expect = 8e-29
Identities = 60/73 (82%), Positives = 68/73 (92%)
Frame = -3
Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
DGLRENILNFS V GTSAKEVMDLIMVTQYFDTIK+LG++SK TT+FIPHGPGHV+DIG
Sbjct: 214 DGLRENILNFSHSVSGTSAKEVMDLIMVTQYFDTIKELGDNSKTTTVFIPHGPGHVKDIG 273
Query: 349 DQIRNGVMEAASA 311
DQIR G+MEA+S+
Sbjct: 274 DQIRTGMMEASSS 286
>ref|NP_566135.1| expressed protein; protein id: At3g01290.1, supported by cDNA:
108086. [Arabidopsis thaliana]
gi|6094555|gb|AAF03497.1|AC010676_7 unknown protein
[Arabidopsis thaliana]
gi|6714460|gb|AAF26146.1|AC008261_3 unknown protein
[Arabidopsis thaliana] gi|21536668|gb|AAM61000.1|
hypersensitive-induced response protein [Arabidopsis
thaliana]
Length = 285
Score = 100 bits (250), Expect = 8e-21
Identities = 42/73 (57%), Positives = 63/73 (85%)
Frame = -3
Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
DGLR+++L F+G V GTSAK+V+D++M+TQYFDT++D+G +SK++ +FIPHGPG V D+
Sbjct: 212 DGLRDSVLGFAGNVPGTSAKDVLDMVMMTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVA 271
Query: 349 DQIRNGVMEAASA 311
QIRNG+++A +A
Sbjct: 272 AQIRNGLLQANNA 284
>ref|NP_201080.1| putative protein; protein id: At5g62740.1, supported by cDNA:
2641., supported by cDNA: gi_17065547 [Arabidopsis
thaliana] gi|10177452|dbj|BAB10843.1|
hypersensitive-induced response protein [Arabidopsis
thaliana] gi|17065548|gb|AAL32928.1|
hypersensitive-induced response protein [Arabidopsis
thaliana] gi|21386975|gb|AAM47891.1|
hypersensitive-induced response protein [Arabidopsis
thaliana] gi|21554781|gb|AAM63689.1|
hypersensitive-induced response protein [Arabidopsis
thaliana]
Length = 286
Score = 100 bits (249), Expect = 1e-20
Identities = 42/75 (56%), Positives = 64/75 (85%)
Frame = -3
Query: 529 DGLRENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIG 350
DGLR+++L F+ V GT+AK+VMD+++VTQYFDT+K++G SSK++ +FIPHGPG VRD+
Sbjct: 212 DGLRDSVLGFAVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVA 271
Query: 349 DQIRNGVMEAASAQV 305
QIR+G+++ +SA +
Sbjct: 272 SQIRDGLLQGSSANL 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,293,659
Number of Sequences: 1393205
Number of extensions: 8935189
Number of successful extensions: 20096
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 19506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20068
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
MF075c11_f |
BP032271 |
1 |
108 |
2 |
GENf040h06 |
BP060082 |
5 |
443 |
3 |
SPDL007d08_f |
BP052411 |
15 |
511 |
4 |
GENf037d02 |
BP059935 |
22 |
378 |
5 |
MWM132f05_f |
AV766823 |
45 |
292 |
6 |
MR027d12_f |
BP078080 |
55 |
457 |
7 |
MF028b03_f |
BP029722 |
55 |
158 |
8 |
GENf022b05 |
BP059282 |
56 |
533 |
9 |
MR066g12_f |
BP081106 |
102 |
440 |
10 |
SPD001f11_f |
BP044101 |
105 |
319 |
|
Lotus japonicus
Kazusa DNA Research Institute