Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001878A_C01 KMC001878A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62754.1| unknown [Arabidopsis thaliana] 154 1e-36
ref|NP_192153.1| putative protein; protein id: At4g02440.1, supp... 154 1e-36
ref|NP_197048.1| putative protein; protein id: At5g15440.1 [Arab... 34 0.49
gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Ni... 30 1.3
sp|P18709|VTA2_XENLA Vitellogenin A2 precursor (VTG A2) [Contain... 34 1.4
>gb|AAM62754.1| unknown [Arabidopsis thaliana]
Length = 337
Score = 154 bits (388), Expect = 1e-36
Identities = 66/84 (78%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Frame = -2
Query: 627 RDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRTINDGNRRKLD-LPCAFCACK 451
R DCLY+C+WPGC+H EEKR YMLFRGVFK+FKR+RVWRTINDGNR K L CAFC C
Sbjct: 232 RGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCD 291
Query: 450 HTWDLHSAFCLRRGFGFHDDGEPV 379
TWDLHS+FCLRR FGFHDDGEPV
Sbjct: 292 ETWDLHSSFCLRRVFGFHDDGEPV 315
Score = 42.4 bits (98), Expect = 0.005
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -3
Query: 410 VSGFMMMGSLWLRAFVCDHGHVSGAWTDVPMY 315
V GF G +RA+VC++GHVSGAWT +P+Y
Sbjct: 305 VFGFHDDGEPVVRAYVCENGHVSGAWTALPLY 336
>ref|NP_192153.1| putative protein; protein id: At4g02440.1, supported by cDNA:
156170. [Arabidopsis thaliana] gi|7487012|pir||T01306
hypothetical protein T14P8.22 - Arabidopsis thaliana
gi|3193286|gb|AAC19270.1| T14P8.22 gene product
[Arabidopsis thaliana] gi|7269004|emb|CAB80737.1|
putative protein [Arabidopsis thaliana]
gi|25083158|gb|AAN72049.1| putative protein [Arabidopsis
thaliana]
Length = 336
Score = 154 bits (388), Expect = 1e-36
Identities = 66/84 (78%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Frame = -2
Query: 627 RDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRTINDGNRRKLD-LPCAFCACK 451
R DCLY+C+WPGC+H EEKR YMLFRGVFK+FKR+RVWRTINDGNR K L CAFC C
Sbjct: 231 RGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCD 290
Query: 450 HTWDLHSAFCLRRGFGFHDDGEPV 379
TWDLHS+FCLRR FGFHDDGEPV
Sbjct: 291 ETWDLHSSFCLRRVFGFHDDGEPV 314
Score = 42.4 bits (98), Expect = 0.005
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -3
Query: 410 VSGFMMMGSLWLRAFVCDHGHVSGAWTDVPMY 315
V GF G +RA+VC++GHVSGAWT +P+Y
Sbjct: 304 VFGFHDDGEPVVRAYVCENGHVSGAWTALPLY 335
>ref|NP_197048.1| putative protein; protein id: At5g15440.1 [Arabidopsis thaliana]
gi|11358131|pir||T51522 hypothetical protein T20K14_50 -
Arabidopsis thaliana gi|9755799|emb|CAC01743.1| putative
protein [Arabidopsis thaliana]
Length = 293
Score = 33.9 bits (76), Expect(2) = 0.49
Identities = 25/70 (35%), Positives = 34/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 627 RDDCLYVCDWPGCVHSE--EKRKYMLFRGVFKNFKRTRVWRT-INDGNRRKLDLPCAFCA 457
R D LYVCD C H + E+ LFRG+FK+F ++V + IN C +C
Sbjct: 136 RTDVLYVCD--PCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCK 193
Query: 456 CKHTWDLHSA 427
K W + A
Sbjct: 194 AK-LWSMLQA 202
Score = 20.8 bits (42), Expect(2) = 0.49
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 368 FVCDHGHVSGAWTDVPM 318
FVC +GH+ G T P+
Sbjct: 223 FVCLNGHLLGICTLAPL 239
>gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Nicotiana tabacum]
Length = 291
Score = 30.0 bits (66), Expect(2) = 1.3
Identities = 24/73 (32%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
Frame = -2
Query: 627 RDDCLYVCDWPGCVH--SEEKRKYMLFRGVFKNFKRTRVWRTINDGNRRKLDL----PCA 466
R+D LYV D C H ++ +FRGVF F R+R + RR+++L C
Sbjct: 141 RNDLLYVSD--PCEHPTGDKDDDLGIFRGVFWGFMRSRTRACL---IRRQVELEEKIKCP 195
Query: 465 FCACKHTWDLHSA 427
FC + W + +A
Sbjct: 196 FCGAR-VWSMTAA 207
Score = 23.1 bits (48), Expect(2) = 1.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 377 LRAFVCDHGHVSGAWTDVPM 318
L FVC +GH+ GA VP+
Sbjct: 225 LEYFVCVNGHLHGACWLVPL 244
>sp|P18709|VTA2_XENLA Vitellogenin A2 precursor (VTG A2) [Contains: Lipovitellin I;
Lipovitellin II; Phosvitin; Phosvette I; Phosvette II]
gi|85867|pir||S03124 vitellogenin A2 precursor - African
clawed frog gi|214878|gb|AAA49982.1| vitellogenin
gi|4388696|emb|CAA68433.1| vitellogenin A2 precursor
[Xenopus laevis]
Length = 1807
Score = 34.3 bits (77), Expect = 1.4
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +3
Query: 333 PSSRNMAMVTDKCSKPQAPHHHETRNPASSRKQSADPRCVYTRRTHMADQASSDSHH*WS 512
PSS + + + + + + HH+ + +SS ++ R + R H SS S S
Sbjct: 1154 PSSSSSSSYSKRSKRREHNPHHQRESSSSSSQEQNKKRNLQENRKHGQKGMSSSSSSSSS 1213
Query: 513 SKPSSV*NS*KPL*RACTSSSPQSERNQANRRRRDSHR 626
S SS +S + +SSS SE N+ ++ R+ ++
Sbjct: 1214 SSSSSSSSS-----SSSSSSSSSSEENRPHKNRQHDNK 1246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,952,895
Number of Sequences: 1393205
Number of extensions: 13036643
Number of successful extensions: 42770
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 40276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42673
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
