Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001877A_C01 KMC001877A_c01
(458 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65231.1| unknown [Arabidopsis thaliana] 102 2e-21
ref|NP_564074.1| expressed protein; protein id: At1g19140.1, sup... 102 2e-21
ref|XP_214637.1| similar to SD02734p [Drosophila melanogaster] [... 66 1e-10
ref|XP_134301.1| RIKEN cDNA 2310005O14 [Mus musculus] gi|2213760... 65 4e-10
dbj|BAB23347.1| unnamed protein product [Mus musculus] 65 4e-10
>gb|AAM65231.1| unknown [Arabidopsis thaliana]
Length = 311
Score = 102 bits (254), Expect = 2e-21
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = -2
Query: 457 RTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGLGN 278
RTILGG+YSTTEIYMLTD S + RDTW+FLD RVKDAFDLKK++QEA+Y AE + AG+G
Sbjct: 230 RTILGGVYSTTEIYMLTDDSLEHRDTWAFLDDRVKDAFDLKKSIQEAKYFAEDIGAGVGK 289
Query: 277 SFQGFVGKVFR 245
S QG + V +
Sbjct: 290 SVQGLMNGVMQ 300
>ref|NP_564074.1| expressed protein; protein id: At1g19140.1, supported by cDNA:
37735., supported by cDNA: gi_14532533 [Arabidopsis
thaliana] gi|25518697|pir||G86324 hypothetical protein
T29M8.1 - Arabidopsis thaliana
gi|8954052|gb|AAF82225.1|AC069143_1 Contains similarity
to a HSPC326 mRNA from Homo sapiens gb|AF161444. EST
gb|AI997162 comes from this gene. [Arabidopsis thaliana]
Length = 311
Score = 102 bits (254), Expect = 2e-21
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = -2
Query: 457 RTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGLGN 278
RTILGG+YSTTEIYMLTD S + RDTW+FLD RVKDAFDLKK++QEA+Y AE + AG+G
Sbjct: 230 RTILGGVYSTTEIYMLTDDSLEHRDTWAFLDDRVKDAFDLKKSIQEAKYFAEDIGAGVGK 289
Query: 277 SFQGFVGKVFR 245
S QG + V +
Sbjct: 290 SVQGLMNGVMQ 300
>ref|XP_214637.1| similar to SD02734p [Drosophila melanogaster] [Rattus norvegicus]
Length = 96
Score = 66.2 bits (160), Expect = 1e-10
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = -2
Query: 457 RTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGL 284
R +L GIY+TTE+ M+ DSSPDF DTW FLD R+ DA ++ T ++ + EA+ GL
Sbjct: 22 RAVLAGIYNTTELVMMQDSSPDFEDTWRFLDNRINDAMNMGHTAKQVKSTGEALVQGL 79
>ref|XP_134301.1| RIKEN cDNA 2310005O14 [Mus musculus] gi|22137603|gb|AAH36386.1|
RIKEN cDNA 2310005O14 gene [Mus musculus]
Length = 313
Score = 64.7 bits (156), Expect = 4e-10
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -2
Query: 457 RTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGL 284
R +L GIY+TTE+ M+ DSSPDF DTW FL+ R+ DA ++ T ++ + EA+ GL
Sbjct: 239 RAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGL 296
>dbj|BAB23347.1| unnamed protein product [Mus musculus]
Length = 123
Score = 64.7 bits (156), Expect = 4e-10
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -2
Query: 457 RTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGL 284
R +L GIY+TTE+ M+ DSSPDF DTW FL+ R+ DA ++ T ++ + EA+ GL
Sbjct: 49 RAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGL 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,948,491
Number of Sequences: 1393205
Number of extensions: 7441271
Number of successful extensions: 15519
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15514
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
