Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001876A_C01 KMC001876A_c01
(432 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_795235.1| acetyl-CoA carboxylase, biotin carboxylase, put... 34 0.48
ref|ZP_00124620.1| hypothetical protein [Pseudomonas syringae pv... 34 0.48
ref|ZP_00084989.1| hypothetical protein [Pseudomonas fluorescens... 34 0.48
ref|NP_747448.1| acetyl-CoA carboxylase, biotin carboxylase [Pse... 33 0.62
ref|NP_254123.1| probable biotin carboxylase subunit of a transc... 33 0.81
>ref|NP_795235.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28855872|gb|AAO58930.1| acetyl-CoA carboxylase,
biotin carboxylase, putative [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 471
Score = 33.9 bits (76), Expect = 0.48
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 DLQIPSSFFSNLLHLCPKQLNILKAKSDIDNLVDSPPLEPEENLSENDSTINASKIL-YE 418
+ QI F N++HL + +I + + + SP L PE+ D ++ A+K + YE
Sbjct: 209 EAQILGDSFGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLSVRAAKAVGYE 268
Query: 419 DA 424
+A
Sbjct: 269 NA 270
>ref|ZP_00124620.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 471
Score = 33.9 bits (76), Expect = 0.48
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 DLQIPSSFFSNLLHLCPKQLNILKAKSDIDNLVDSPPLEPEENLSENDSTINASKIL-YE 418
+ QI F N++HL + +I + + + SP L PE+ D ++ A+K + YE
Sbjct: 209 EAQILGDSFGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLSVRAAKAVGYE 268
Query: 419 DA 424
+A
Sbjct: 269 NA 270
>ref|ZP_00084989.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 481
Score = 33.9 bits (76), Expect = 0.48
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 DLQIPSSFFSNLLHLCPKQLNILKAKSDIDNLVDSPPLEPEENLSENDSTINASKIL-YE 418
+ QI F N++HL + +I + + + SP L PE+ D ++ A+K + YE
Sbjct: 219 EAQILGDSFGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLSVRAAKAVGYE 278
Query: 419 DA 424
+A
Sbjct: 279 NA 280
>ref|NP_747448.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
KT2440] gi|24987158|gb|AAN70912.1|AE016735_5 acetyl-CoA
carboxylase, biotin carboxylase [Pseudomonas putida
KT2440]
Length = 471
Score = 33.5 bits (75), Expect = 0.62
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 DLQIPSSFFSNLLHLCPKQLNILKAKSDIDNLVDSPPLEPEENLSENDSTINASK-ILYE 418
+ QI F N++HL + +I + + + SP L PE+ D + A+K + YE
Sbjct: 209 EAQILGDSFGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVNYE 268
Query: 419 DA 424
+A
Sbjct: 269 NA 270
>ref|NP_254123.1| probable biotin carboxylase subunit of a transcarboxylase
[Pseudomonas aeruginosa PA01] gi|11351121|pir||G82966
probable biotin carboxylase subunit of a
transcarboxylase PA5436 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gi|9951765|gb|AAG08821.1|AE004956_5 probable biotin
carboxylase subunit of a transcarboxylase [Pseudomonas
aeruginosa PAO1]
Length = 471
Score = 33.1 bits (74), Expect = 0.81
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 DLQIPSSFFSNLLHLCPKQLNILKAKSDIDNLVDSPPLEPEENLSENDSTINASKIL-YE 418
+ QI + F N +HL + +I + + + SP L PE+ D + A+K + YE
Sbjct: 209 EAQILADSFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYE 268
Query: 419 DA 424
+A
Sbjct: 269 NA 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,723,205
Number of Sequences: 1393205
Number of extensions: 6514396
Number of successful extensions: 14540
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 14166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14533
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
