Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001875A_C01 KMC001875A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187412.1| unknown protein; protein id: At3g07560.1, suppo... 65 9e-10
ref|NP_658453.1| DUF6, Integral membrane protein DUF6 [Bacillus ... 34 1.3
emb|CAA26880.1| C1q B-chain precursor [Homo sapiens] 34 1.3
sp|P02746|C1QB_HUMAN Complement C1q subcomponent, B chain precursor 34 1.3
ref|NP_000482.2| complement component 1, q subcomponent, beta po... 34 1.3
>ref|NP_187412.1| unknown protein; protein id: At3g07560.1, supported by cDNA:
gi_18700168, supported by cDNA: gi_20147310 [Arabidopsis
thaliana] gi|6041851|gb|AAF02160.1|AC009853_20 unknown
protein [Arabidopsis thaliana]
gi|18700169|gb|AAL77696.1| AT3g07560/F21O3_27
[Arabidopsis thaliana] gi|20147311|gb|AAM10369.1|
AT3g07560/F21O3_27 [Arabidopsis thaliana]
Length = 304
Score = 64.7 bits (156), Expect = 9e-10
Identities = 34/67 (50%), Positives = 41/67 (60%), Gaps = 6/67 (8%)
Frame = -1
Query: 607 FVLRLLGIKTKPNKVN--PQGPNGHMLGPNGHPLPGPHNSSANVNAIEGAKPAS----GG 446
FVLR+LG++T+P K+ PQGPNG LP PH N N +EG K A+ GG
Sbjct: 247 FVLRMLGVRTRPRKMQQPPQGPNG---------LPLPHQPHGNQNYLEGPKTAAPGGGGG 297
Query: 445 WDNVWGN 425
WDNVWGN
Sbjct: 298 WDNVWGN 304
>ref|NP_658453.1| DUF6, Integral membrane protein DUF6 [Bacillus anthracis A2012]
Length = 219
Score = 34.3 bits (77), Expect = 1.3
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = -2
Query: 285 FLVLLEAGSSAT-------VPKIYLASVCFGSGGCCYVLSTCIILYLESECNLAYLLKIF 127
F+ L GS AT +P I A++ FG GC + I++++SE N + LLK +
Sbjct: 13 FVPLFWGGSFATAEHVLTEIPPITAATIRFGLAGCILIG----IVFMKSEWNTSLLLKNW 68
Query: 126 RTMNFVSFHVLF 91
+ + FVS +F
Sbjct: 69 KGLLFVSLTGIF 80
>emb|CAA26880.1| C1q B-chain precursor [Homo sapiens]
Length = 228
Score = 34.3 bits (77), Expect = 1.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 589 GIKTKPNKVNPQGPNGHMLGPNGHPLPGPHNSSANVNAIE 470
GI P KV P+GP G GP PGP S + A +
Sbjct: 56 GIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYKATQ 95
>sp|P02746|C1QB_HUMAN Complement C1q subcomponent, B chain precursor
Length = 251
Score = 34.3 bits (77), Expect = 1.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 589 GIKTKPNKVNPQGPNGHMLGPNGHPLPGPHNSSANVNAIE 470
GI P KV P+GP G GP PGP S + A +
Sbjct: 79 GIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYKATQ 118
>ref|NP_000482.2| complement component 1, q subcomponent, beta polypeptide precursor;
complement component C1q, B chain [Homo sapiens]
Length = 253
Score = 34.3 bits (77), Expect = 1.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 589 GIKTKPNKVNPQGPNGHMLGPNGHPLPGPHNSSANVNAIE 470
GI P KV P+GP G GP PGP S + A +
Sbjct: 81 GIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYKATQ 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,864,185
Number of Sequences: 1393205
Number of extensions: 12660889
Number of successful extensions: 38028
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 35476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37953
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
