Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001869A_C01 KMC001869A_c01
(957 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190695.1| putative protein; protein id: At3g51270.1 [Arab... 217 2e-55
dbj|BAB92640.1| B1099D03.17 [Oryza sativa (japonica cultivar-gro... 204 2e-51
gb|AAH47169.1| Similar to hypothetical protein FLJ11159 [Danio r... 113 5e-24
ref|NP_080210.1| RIKEN cDNA 2010110K24 [Mus musculus] gi|1284253... 102 1e-20
ref|XP_217975.1| similar to RIKEN cDNA 2010110K24 [Mus musculus]... 102 1e-20
>ref|NP_190695.1| putative protein; protein id: At3g51270.1 [Arabidopsis thaliana]
gi|11357630|pir||T45758 hypothetical protein F24M12.310
- Arabidopsis thaliana gi|6562279|emb|CAB62649.1|
putative protein [Arabidopsis thaliana]
Length = 472
Score = 217 bits (552), Expect = 2e-55
Identities = 119/247 (48%), Positives = 161/247 (65%), Gaps = 7/247 (2%)
Frame = -1
Query: 957 GLIHCDFNEFNIMINDDEKITVIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNLTFQ 778
GLIHCDFNEFNIMI+D+EKIT+IDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFN++F
Sbjct: 232 GLIHCDFNEFNIMIDDEEKITMIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNMSFH 291
Query: 777 ESIDDIDDSDEGKDEDGSPCLSEIDRATGSLDRELAASGFTKKDAEDIQRFIEGTPESDS 598
E + ++++ DE+ P +I + +LD++L ASGFT+K+ D+ +FIEG E
Sbjct: 292 EDKGESEETE--VDENSRPSFFDITKDANALDKDLEASGFTRKEQTDLDKFIEGGVEKSE 349
Query: 597 NSDSEGVDSVEDLNEAIIKDDDFSYLSE------QDDEHESK-GIEESCEAGQSYASDKG 439
+SD D D E + ++ L+E QD E +S G+E E + +
Sbjct: 350 DSDE---DEESDDEEQTCESNEEGNLNEIKSLQLQDKEQKSSDGVEAEVELDNTENGESN 406
Query: 438 DASDEEEHDQNEIENDAELNKSLNKQRRHAIASARRGRKTIASRNSYKDKGGRSSHSSKV 259
DE ++ E E +AEL K+L K RR A+A+AR RK+ +SRN+YKDK GR S +SK+
Sbjct: 407 GDEDEVGSNEEEEEKEAELEKNLGKVRRRAMAAARGRRKSQSSRNTYKDK-GRGSQNSKI 465
Query: 258 QKQLSSW 238
+S +
Sbjct: 466 HSNMSGF 472
>dbj|BAB92640.1| B1099D03.17 [Oryza sativa (japonica cultivar-group)]
Length = 646
Score = 204 bits (519), Expect = 2e-51
Identities = 120/274 (43%), Positives = 164/274 (59%), Gaps = 34/274 (12%)
Frame = -1
Query: 957 GLIHCDFNEFNIMINDDEKITVIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNLTFQ 778
GLIHCDFNEFNIMI+DDEK+T+IDFPQMVSV HRNAQM+FDRDIECI+KFFRKRF+L+
Sbjct: 376 GLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVKHRNAQMFFDRDIECIYKFFRKRFHLS-S 434
Query: 777 ESIDDIDDSDEGKDEDGSPCLSEIDRATGSLDRELAASGFTKKDAEDIQRFI-EGTPESD 601
E ++ D SD DE+ P I +A GSLD+ELAASGFT+K+ ++ ++I + E
Sbjct: 435 EKCEEQDGSDIDDDENSRPSFLSIQKAAGSLDKELAASGFTRKEQVEMDKYIDQNAEEES 494
Query: 600 SNSDSEGVDSVEDLNEAIIKDDDFSYLSEQD------------DEHESKGIEESCEAGQS 457
S+ DS ED ++ +K ++EQD D +E + + E S
Sbjct: 495 SDDDSTSEQDNEDGDDVAVKIGSLK-IAEQDSAEVPDCTLASKDSNEPETFAKENETSTS 553
Query: 456 YA----------SDKGDA-----------SDEEEHDQNEIENDAELNKSLNKQRRHAIAS 340
+ S GDA SD++ D + E+D L K LNKQR+ AIA+
Sbjct: 554 CSGENNSINPSPSSNGDAKEPTESQDNDDSDDDSSDDPDGEDDDALAKQLNKQRKRAIAA 613
Query: 339 ARRGRKTIASRNSYKDKGGRSSHSSKVQKQLSSW 238
A R+ I+SRN+YK K G+ + +SK+++Q W
Sbjct: 614 AHGRRRPISSRNAYKYK-GKGTMNSKIERQACKW 646
>gb|AAH47169.1| Similar to hypothetical protein FLJ11159 [Danio rerio]
Length = 512
Score = 113 bits (282), Expect = 5e-24
Identities = 62/140 (44%), Positives = 85/140 (60%)
Frame = -1
Query: 957 GLIHCDFNEFNIMINDDEKITVIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNLTFQ 778
GLIH DFNEFN+M++D++ +T+IDFPQMVS SH NA+ YFDRD++CI FF KRFN
Sbjct: 223 GLIHGDFNEFNLMLDDNDHVTMIDFPQMVSTSHINAEWYFDRDVKCIRDFFIKRFNY--- 279
Query: 777 ESIDDIDDSDEGKDEDGSPCLSEIDRATGSLDRELAASGFTKKDAEDIQRFIEGTPESDS 598
+ + P +I RA SLD E++ASG+TK+ +D PESD
Sbjct: 280 -------------ESELYPTFKDIRRAC-SLDVEISASGYTKELQQDDSLLHPEGPESDG 325
Query: 597 NSDSEGVDSVEDLNEAIIKD 538
+ D E +S +D ++A D
Sbjct: 326 DEDDESPESTDDTHQASAGD 345
>ref|NP_080210.1| RIKEN cDNA 2010110K24 [Mus musculus] gi|12842538|dbj|BAB25639.1|
unnamed protein product [Mus musculus]
gi|12842641|dbj|BAB25676.1| unnamed protein product [Mus
musculus] gi|26339924|dbj|BAC33625.1| unnamed protein
product [Mus musculus]
Length = 547
Score = 102 bits (253), Expect = 1e-20
Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 1/182 (0%)
Frame = -1
Query: 957 GLIHCDFNEFNIMINDDEKITVIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNLTFQ 778
GLIH DFNEFN+M++ D+ IT+IDFPQMVS SH NA+ YFDRD++CI +FF KRF+
Sbjct: 223 GLIHGDFNEFNLMLDKDDHITMIDFPQMVSTSHPNAEWYFDRDVKCIREFFMKRFSY--- 279
Query: 777 ESIDDIDDSDEGKDEDGSPCLSEIDRATGSLDRELAASGFTKKDAEDIQRFIEGTPESDS 598
+ + P S+I R SLD E++ASG+TK+ D + P+
Sbjct: 280 -------------ESELYPTFSDI-RKEDSLDVEVSASGYTKEMQADDELLHPVGPDDKI 325
Query: 597 NSDSEGVDSVEDLNEAIIKDDDF-SYLSEQDDEHESKGIEESCEAGQSYASDKGDASDEE 421
E D E + K + S L ++ D + G C + S G +E
Sbjct: 326 TETEEDSDFTFSDEEMLEKAKVWRSELEKEADPADESGGSWCCSSTDSKQIKDGGLPEES 385
Query: 420 EH 415
H
Sbjct: 386 AH 387
>ref|XP_217975.1| similar to RIKEN cDNA 2010110K24 [Mus musculus] [Rattus norvegicus]
Length = 551
Score = 102 bits (253), Expect = 1e-20
Identities = 71/191 (37%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Frame = -1
Query: 957 GLIHCDFNEFNIMINDDEKITVIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNLTFQ 778
GLIH DFNEFN+M++ D+ IT+IDFPQMVS SH NA+ YFDRD++CI +FF KRFN
Sbjct: 223 GLIHGDFNEFNLMLDKDDHITMIDFPQMVSTSHPNAEWYFDRDVKCIREFFLKRFNY--- 279
Query: 777 ESIDDIDDSDEGKDEDGSPCLSEIDRATGSLDRELAASGFTKK-DAEDIQRFIEGTPESD 601
+ + P S+I R SLD E++ASG+TK+ A+D G +
Sbjct: 280 -------------ESELYPTFSDI-RREDSLDVEVSASGYTKEMQADDELLHPVGPDDKI 325
Query: 600 SNSDSEGVDSVED---LNEAIIKDDDFSYLSEQDDEHESKGIEESCEAGQSYASDKGDAS 430
+ ++ E S+ D L A ++ + DE S S ++ Q K D
Sbjct: 326 TETEEESDLSLSDEEMLERAKVQRSELENEPNPADESGSSCCFSSADSKQM----KEDGL 381
Query: 429 DEEEHDQNEIE 397
EE D + E
Sbjct: 382 PEESADVSSFE 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,778,027
Number of Sequences: 1393205
Number of extensions: 16149377
Number of successful extensions: 86695
Number of sequences better than 10.0: 1609
Number of HSP's better than 10.0 without gapping: 59877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73586
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54078381240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
