Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001868A_C01 KMC001868A_c01
(456 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB92521.1| OJ1276_B06.30 [Oryza sativa (japonica cultivar-g... 69 3e-11
ref|NP_186805.1| unknown protein; protein id: At3g01560.1 [Arabi... 65 4e-10
ref|NP_196958.1| putative protein; protein id: At5g14540.1 [Arab... 63 1e-09
gb|AAM96980.1| putative protein [Arabidopsis thaliana] gi|280597... 63 1e-09
ref|NP_194559.2| predicted proline-rich protein; protein id: At4... 43 0.001
>dbj|BAB92521.1| OJ1276_B06.30 [Oryza sativa (japonica cultivar-group)]
Length = 699
Score = 68.6 bits (166), Expect = 3e-11
Identities = 32/43 (74%), Positives = 38/43 (87%), Gaps = 1/43 (2%)
Frame = -3
Query: 451 RDHVRATVRKLTENGQSVDLNAVLDKLMNEGDM-QPTRGWFGR 326
R+ VRATVR+LTENGQ+VDLN VLDKLMN+ D+ QP +GWFGR
Sbjct: 657 REQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGWFGR 699
>ref|NP_186805.1| unknown protein; protein id: At3g01560.1 [Arabidopsis thaliana]
gi|6016715|gb|AAF01541.1|AC009325_11 unknown protein
[Arabidopsis thaliana]
Length = 493
Score = 64.7 bits (156), Expect = 4e-10
Identities = 33/42 (78%), Positives = 35/42 (82%)
Frame = -3
Query: 454 PRDHVRATVRKLTENGQSVDLNAVLDKLMNEGDMQPTRGWFG 329
PRD VRATVRKLTENGQ+VDLN VLDKLMNEG P G+FG
Sbjct: 451 PRDQVRATVRKLTENGQAVDLNVVLDKLMNEGG-APPGGFFG 491
>ref|NP_196958.1| putative protein; protein id: At5g14540.1 [Arabidopsis thaliana]
gi|11358038|pir||T48627 hypothetical protein T15N1.30 -
Arabidopsis thaliana gi|7573303|emb|CAB87621.1| putative
protein [Arabidopsis thaliana]
Length = 530
Score = 63.2 bits (152), Expect = 1e-09
Identities = 32/50 (64%), Positives = 34/50 (68%), Gaps = 8/50 (16%)
Frame = -3
Query: 454 PRDHVRATVRKLTENGQSVDLNAVLDKLMN--------EGDMQPTRGWFG 329
PRD VR TVR LTENGQ+VDLN VLDKLMN + QP RGWFG
Sbjct: 479 PRDQVRGTVRTLTENGQAVDLNVVLDKLMNGDRGAMMQQQQQQPPRGWFG 528
>gb|AAM96980.1| putative protein [Arabidopsis thaliana] gi|28059781|gb|AAO30092.1|
putative protein [Arabidopsis thaliana]
Length = 357
Score = 63.2 bits (152), Expect = 1e-09
Identities = 32/50 (64%), Positives = 34/50 (68%), Gaps = 8/50 (16%)
Frame = -3
Query: 454 PRDHVRATVRKLTENGQSVDLNAVLDKLMN--------EGDMQPTRGWFG 329
PRD VR TVR LTENGQ+VDLN VLDKLMN + QP RGWFG
Sbjct: 306 PRDQVRGTVRTLTENGQAVDLNVVLDKLMNGDRGAMMQQQQQQPPRGWFG 355
>ref|NP_194559.2| predicted proline-rich protein; protein id: At4g28300.1, supported
by cDNA: gi_17380877, supported by cDNA: gi_20465846
[Arabidopsis thaliana] gi|17380878|gb|AAL36251.1|
putative proline-rich protein [Arabidopsis thaliana]
gi|20465847|gb|AAM20028.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 496
Score = 43.1 bits (100), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -3
Query: 448 DHVRATVRKLTENGQSVDLNAVLDKLMNEGDMQPTRGW 335
DHV A ++++ E+GQ +D N +LD+L + P RGW
Sbjct: 459 DHVMAVIQRMEESGQPIDFNTLLDRLSGQSSGGPPRGW 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,812,203
Number of Sequences: 1393205
Number of extensions: 8010808
Number of successful extensions: 21161
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 20433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21108
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
