Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001866A_C01 KMC001866A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibito... 73 1e-14
pir||T14329 dermal glycoprotein precursor, extracellular - carro... 79 3e-14
ref|NP_563679.1| expressed protein; protein id: At1g03230.1, sup... 74 1e-12
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 73 2e-12
emb|CAC10209.1| putative extracellular dermal glycoprotein [Cice... 71 7e-12
>gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibitor protein
precursor [Lycopersicon esculentum]
Length = 438
Score = 72.8 bits (177), Expect(2) = 1e-14
Identities = 41/81 (50%), Positives = 52/81 (63%), Gaps = 2/81 (2%)
Frame = -1
Query: 538 SRIGPGVPAIDLVLQNG-VEWPIIGANSMVQF-DDVICLGFVDAGSNPKASQVGFVNGGS 365
+R+GP VP+IDLVLQN V W I GANSMVQ ++V+CLG +D G N +
Sbjct: 344 TRVGPAVPSIDLVLQNANVVWTIFGANSMVQVSENVLCLGVLDGGVNAR----------- 392
Query: 364 HPVTSITIGAHQLENNLLKFD 302
TSI IG H +E+NLL+FD
Sbjct: 393 ---TSIVIGGHTIEDNLLQFD 410
Score = 28.1 bits (61), Expect(2) = 1e-14
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 297 AASRLGFRSLFL-EHDNCQNFRFTS 226
AASRLGF S L C NF FTS
Sbjct: 412 AASRLGFTSSILFRQTTCDNFNFTS 436
>pir||T14329 dermal glycoprotein precursor, extracellular - carrot (fragment)
gi|285741|dbj|BAA03413.1| EDGP precursor [Daucus carota]
Length = 433
Score = 79.0 bits (193), Expect = 3e-14
Identities = 46/96 (47%), Positives = 61/96 (62%), Gaps = 2/96 (2%)
Frame = -1
Query: 538 SRIGPGVPAIDLVLQN-GVEWPIIGANSMVQFDD-VICLGFVDAGSNPKASQVGFVNGGS 365
+R+GP VP+IDLVLQ+ V W I G+NSMV +D V+CLG VD GSN +
Sbjct: 341 TRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLR----------- 389
Query: 364 HPVTSITIGAHQLENNLLKFDLRSFKAWVQITVLGA 257
TSI IG HQLE+NL++FDL + + T+LG+
Sbjct: 390 ---TSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGS 422
>ref|NP_563679.1| expressed protein; protein id: At1g03230.1, supported by cDNA:
gi_12083229 [Arabidopsis thaliana]
gi|25296173|pir||G86163 hypothetical protein F15K9.16 -
Arabidopsis thaliana gi|3850580|gb|AAC72120.1| Strong
similarity to gb|D14550 extracellular dermal
glycoprotein (EDGP) precursor from Daucus carota. ESTs
gb|84105 and gb|AI100071 come from this gene.
[Arabidopsis thaliana]
gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein
[Arabidopsis thaliana]
Length = 434
Score = 73.6 bits (179), Expect = 1e-12
Identities = 47/95 (49%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Frame = -1
Query: 538 SRIGPGVPAIDLVLQN-GVEWPIIGANSMVQF-DDVICLGFVDAGSNPKASQVGFVNGGS 365
+R+G VP I LVL + V W I GANSMV DDVICLGFVD G NP AS
Sbjct: 340 TRLGYAVPEIQLVLHSKDVVWRIFGANSMVSVSDDVICLGFVDGGVNPGAS--------- 390
Query: 364 HPVTSITIGAHQLENNLLKFDLRSFKAWVQITVLG 260
+ IG QLE+NL++FDL S K T+LG
Sbjct: 391 -----VVIGGFQLEDNLIEFDLASNKFGFSSTLLG 420
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 73.2 bits (178), Expect = 2e-12
Identities = 46/95 (48%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Frame = -1
Query: 538 SRIGPGVPAIDLVLQN-GVEWPIIGANSMVQF-DDVICLGFVDAGSNPKASQVGFVNGGS 365
+R+G VP I+LVL + V W I GANSMV DDVICLGFVD G N +
Sbjct: 339 TRLGYAVPEIELVLHSKDVVWRIFGANSMVSVSDDVICLGFVDGGVNAR----------- 387
Query: 364 HPVTSITIGAHQLENNLLKFDLRSFKAWVQITVLG 260
TS+ IG QLE+NL++FDL S K T+LG
Sbjct: 388 ---TSVVIGGFQLEDNLIEFDLASNKFGFSSTLLG 419
>emb|CAC10209.1| putative extracellular dermal glycoprotein [Cicer arietinum]
Length = 369
Score = 71.2 bits (173), Expect = 7e-12
Identities = 42/85 (49%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -1
Query: 538 SRIGPGVPAIDLVLQNGVEWPIIGANSMVQF-DDVICLGFVDAGSNPKASQVGFVNGGSH 362
+ I +P IDLVLQ GV+W I G N MV +V CLGFVD G+ P+ S
Sbjct: 279 TNIENSLPRIDLVLQGGVQWSIYGNNLMVNVKKNVACLGFVDGGTEPRM---------SF 329
Query: 361 PVTSITIGAHQLENNLLKFDLRSFK 287
SI IG HQLE+NLL FDL S K
Sbjct: 330 AKASIVIGGHQLEDNLLVFDLNSSK 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,922,060
Number of Sequences: 1393205
Number of extensions: 10024961
Number of successful extensions: 21168
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 20449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21131
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
