Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001865A_C01 KMC001865A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T48623 hypothetical protein F18O22.290 - Arabidopsis thalia... 102 3e-21
ref|NP_568301.1| putative protein; protein id: At5g14500.1, supp... 102 3e-21
gb|AAO42313.1| unknown protein [Arabidopsis thaliana] 102 3e-21
ref|NP_566143.1| expressed protein; protein id: At3g01590.1, sup... 99 4e-20
gb|AAL27499.1|AF439827_1 AT3g01590/F4P13_13 [Arabidopsis thalian... 97 1e-19
>pir||T48623 hypothetical protein F18O22.290 - Arabidopsis thaliana
gi|7573475|emb|CAB87789.1| putative protein [Arabidopsis
thaliana]
Length = 381
Score = 102 bits (254), Expect = 3e-21
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = -3
Query: 574 WDKKSKVLPDLGDNDSKMMMCVKSAAIDSPILLKPSEEWKGYQELSTVSSSYCSGQLDPR 395
WDKK+K + D+GD D M+CV S AI+SPI+LKP EEWKG QELS VSSSYCSGQLDPR
Sbjct: 315 WDKKAKSIADMGDEDYTTMLCVDSGAIESPIVLKPHEEWKGRQELSIVSSSYCSGQLDPR 374
Query: 394 MVLYG 380
VLYG
Sbjct: 375 KVLYG 379
>ref|NP_568301.1| putative protein; protein id: At5g14500.1, supported by cDNA:
93845. [Arabidopsis thaliana]
Length = 306
Score = 102 bits (254), Expect = 3e-21
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = -3
Query: 574 WDKKSKVLPDLGDNDSKMMMCVKSAAIDSPILLKPSEEWKGYQELSTVSSSYCSGQLDPR 395
WDKK+K + D+GD D M+CV S AI+SPI+LKP EEWKG QELS VSSSYCSGQLDPR
Sbjct: 240 WDKKAKSIADMGDEDYTTMLCVDSGAIESPIVLKPHEEWKGRQELSIVSSSYCSGQLDPR 299
Query: 394 MVLYG 380
VLYG
Sbjct: 300 KVLYG 304
>gb|AAO42313.1| unknown protein [Arabidopsis thaliana]
Length = 306
Score = 102 bits (254), Expect = 3e-21
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = -3
Query: 574 WDKKSKVLPDLGDNDSKMMMCVKSAAIDSPILLKPSEEWKGYQELSTVSSSYCSGQLDPR 395
WDKK+K + D+GD D M+CV S AI+SPI+LKP EEWKG QELS VSSSYCSGQLDPR
Sbjct: 240 WDKKAKSIADMGDEDYTTMLCVDSGAIESPIVLKPHEEWKGRQELSIVSSSYCSGQLDPR 299
Query: 394 MVLYG 380
VLYG
Sbjct: 300 KVLYG 304
>ref|NP_566143.1| expressed protein; protein id: At3g01590.1, supported by cDNA:
41354., supported by cDNA: gi_16612257, supported by
cDNA: gi_20258972 [Arabidopsis thaliana]
gi|6016717|gb|AAF01543.1|AC009325_13 unknown protein
[Arabidopsis thaliana] gi|15810277|gb|AAL07026.1|
unknown protein [Arabidopsis thaliana]
gi|20258973|gb|AAM14202.1| unknown protein [Arabidopsis
thaliana] gi|21593681|gb|AAM65648.1| unknown
[Arabidopsis thaliana]
Length = 306
Score = 99.0 bits (245), Expect = 4e-20
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -3
Query: 574 WDKKSKVLPDLGDNDSKMMMCVKSAAIDSPILLKPSEEWKGYQELSTVSSSYCSGQLDPR 395
WDKK+K + D+GD D K M+CV S I+ +LLKP EEWKG QELS VSSSYCSGQLDPR
Sbjct: 240 WDKKAKTIADMGDEDYKTMLCVDSGVIEPLVLLKPREEWKGRQELSIVSSSYCSGQLDPR 299
Query: 394 MVLYG 380
VLYG
Sbjct: 300 KVLYG 304
>gb|AAL27499.1|AF439827_1 AT3g01590/F4P13_13 [Arabidopsis thaliana]
gi|23308359|gb|AAN18149.1| At3g01590/F4P13_13
[Arabidopsis thaliana]
Length = 306
Score = 97.4 bits (241), Expect = 1e-19
Identities = 44/65 (67%), Positives = 51/65 (77%)
Frame = -3
Query: 574 WDKKSKVLPDLGDNDSKMMMCVKSAAIDSPILLKPSEEWKGYQELSTVSSSYCSGQLDPR 395
WDKK+K + D+GD D K M+CV S I+ +LLKP E+WKG QELS VSSSYCSGQLDPR
Sbjct: 240 WDKKAKTITDMGDEDYKTMLCVDSGVIEPLVLLKPREKWKGRQELSIVSSSYCSGQLDPR 299
Query: 394 MVLYG 380
VLYG
Sbjct: 300 KVLYG 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,948,649
Number of Sequences: 1393205
Number of extensions: 9662389
Number of successful extensions: 21493
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21492
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
