Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001860A_C01 KMC001860A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176372.1| hypothetical protein; protein id: At1g61790.1 [... 111 5e-24
gb|AAK53863.1|AC016781_17 Putative protein with similarity to pu... 97 2e-19
ref|NP_172622.1| hypothetical protein; protein id: At1g11560.1 [... 96 2e-19
pir||H86248 protein T23J18.22 [imported] - Arabidopsis thaliana ... 56 3e-07
gb|EAA05728.1| agCP10259 [Anopheles gambiae str. PEST] 37 0.16
>ref|NP_176372.1| hypothetical protein; protein id: At1g61790.1 [Arabidopsis
thaliana] gi|25404352|pir||G96643 hypothetical protein
T13M11.15 [imported] - Arabidopsis thaliana
gi|4508079|gb|AAD21423.1| 66284
Length = 346
Score = 111 bits (278), Expect = 5e-24
Identities = 51/70 (72%), Positives = 61/70 (86%)
Frame = -2
Query: 542 EGFTVGFLYTVVGLLLAFMTHGLVLIKSVTLQRVIMMFALLVSFLAVKQVVSLDNWKTGY 363
EGF VGFLYTVVGLLLAF+T+ LV +K++T QR+IM+ AL +SF AVK+VV LDNWKTGY
Sbjct: 276 EGFAVGFLYTVVGLLLAFVTNVLVRVKNITAQRLIMLLALFISFWAVKKVVYLDNWKTGY 335
Query: 362 GIHGFWPSSW 333
GIH +WPSSW
Sbjct: 336 GIHPYWPSSW 345
>gb|AAK53863.1|AC016781_17 Putative protein with similarity to putative prostate cancer tumor
suppressor [Homo sapiens] [Oryza sativa]
Length = 336
Score = 96.7 bits (239), Expect = 2e-19
Identities = 41/70 (58%), Positives = 56/70 (79%)
Frame = -2
Query: 542 EGFTVGFLYTVVGLLLAFMTHGLVLIKSVTLQRVIMMFALLVSFLAVKQVVSLDNWKTGY 363
EGF VGFLYT+VGL++A +TH LV ++S+ +QR M+ +++ + AVK+V+ LDNWKTGY
Sbjct: 266 EGFAVGFLYTLVGLMIAMVTHLLVRVESLQIQRFTMLAVMIIGWWAVKKVILLDNWKTGY 325
Query: 362 GIHGFWPSSW 333
IH FWPSSW
Sbjct: 326 SIHTFWPSSW 335
>ref|NP_172622.1| hypothetical protein; protein id: At1g11560.1 [Arabidopsis
thaliana]
Length = 343
Score = 96.3 bits (238), Expect = 2e-19
Identities = 45/70 (64%), Positives = 57/70 (81%)
Frame = -2
Query: 542 EGFTVGFLYTVVGLLLAFMTHGLVLIKSVTLQRVIMMFALLVSFLAVKQVVSLDNWKTGY 363
EGF VGFLYTVVGLLLAF+T+ +V +K + QR+ M+ AL +SF AV++VV LDNWKTGY
Sbjct: 272 EGFFVGFLYTVVGLLLAFVTNVVVRVKKLDEQRMAMLLALSISFWAVRKVVYLDNWKTGY 331
Query: 362 GIHGFWPSSW 333
I+ +WPSSW
Sbjct: 332 EIYPYWPSSW 341
>pir||H86248 protein T23J18.22 [imported] - Arabidopsis thaliana
gi|6554189|gb|AAF16635.1|AC011661_13 T23J18.22
[Arabidopsis thaliana]
Length = 522
Score = 55.8 bits (133), Expect = 3e-07
Identities = 28/46 (60%), Positives = 36/46 (77%)
Frame = -2
Query: 542 EGFTVGFLYTVVGLLLAFMTHGLVLIKSVTLQRVIMMFALLVSFLA 405
EGF VGFLYTVVGLLLAF+T+ +V +K + QR+ M+ AL +SF A
Sbjct: 272 EGFFVGFLYTVVGLLLAFVTNVVVRVKKLDEQRMAMLLALSISFWA 317
>gb|EAA05728.1| agCP10259 [Anopheles gambiae str. PEST]
Length = 576
Score = 37.0 bits (84), Expect = 0.16
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +2
Query: 305 EPCQASKFSSS*KAKTHESHNPSSNYPTTQPASQPKTKPRAQTS*SPSARSHS*SEQDHE 484
+P ++K SS + + NPS P PA+ P +KP A T+ +PS RS + +
Sbjct: 29 KPPASTKSPSSGSTAAYPA-NPSPRSPAANPAASPTSKPPASTTANPSPRSSA-----NP 82
Query: 485 S*TPRANPQQCTRIP 529
+ +P + P +IP
Sbjct: 83 AASPTSKPTSINKIP 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,112,434
Number of Sequences: 1393205
Number of extensions: 8864139
Number of successful extensions: 31698
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 27986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30967
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
