Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001859A_C01 KMC001859A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196670.1| putative protein; protein id: At5g11090.1, supp... 91 1e-26
ref|NP_197910.1| serine-rich protein; protein id: At5g25280.1 [A... 89 5e-26
gb|AAM67211.1| serine-rich protein [Arabidopsis thaliana] 89 2e-25
gb|AAN62344.1|AF506028_11 CTV.15 [Poncirus trifoliata] 107 1e-22
ref|NP_197537.1| putative protein; protein id: At5g20370.1 [Arab... 49 4e-13
>ref|NP_196670.1| putative protein; protein id: At5g11090.1, supported by cDNA:
32958. [Arabidopsis thaliana] gi|11358372|pir||T51798
hypothetical protein T5K6_80 - Arabidopsis thaliana
gi|9795161|emb|CAC03457.1| putative protein [Arabidopsis
thaliana] gi|21592828|gb|AAM64778.1| serine-rich protein
[Arabidopsis thaliana] gi|28466931|gb|AAO44074.1|
At5g11090 [Arabidopsis thaliana]
Length = 217
Score = 90.9 bits (224), Expect(2) = 1e-26
Identities = 45/65 (69%), Positives = 55/65 (84%)
Frame = -3
Query: 440 YSSNRLNARRSAMTNSLVRIRGVEGEIVRRALSALIRPSSHQQRRRGDFRPRPSRLSVMS 261
Y++N LN RRSAMTNSLVRI GVEGE VRRAL+ LIRPSSH +RR ++PRPSRLS+M+
Sbjct: 153 YTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIMA 212
Query: 260 KAADD 246
KA ++
Sbjct: 213 KADEN 217
Score = 50.8 bits (120), Expect(2) = 1e-26
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = -2
Query: 564 KKQSNQRHQQQKRTCMCSPTTHPGSFRCSLHK 469
K Q + + R CMCSPTTHPGSFRCSLHK
Sbjct: 109 KNQPPSHNHKISRRCMCSPTTHPGSFRCSLHK 140
>ref|NP_197910.1| serine-rich protein; protein id: At5g25280.1 [Arabidopsis thaliana]
gi|15146224|gb|AAK83595.1| AT5g25280/F18G18_20
[Arabidopsis thaliana] gi|15529141|gb|AAK97665.1|
AT5g25280/F18G18_20 [Arabidopsis thaliana]
gi|16974351|gb|AAL31101.1| AT5g25280/F18G18_20
[Arabidopsis thaliana]
Length = 220
Score = 88.6 bits (218), Expect(2) = 5e-26
Identities = 46/64 (71%), Positives = 52/64 (80%)
Frame = -3
Query: 440 YSSNRLNARRSAMTNSLVRIRGVEGEIVRRALSALIRPSSHQQRRRGDFRPRPSRLSVMS 261
Y++N LN RRSAMTNSLVRI GVEGE VRRAL+ LIRPSSHQ +RR + PR SRL+ MS
Sbjct: 156 YTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215
Query: 260 KAAD 249
KA D
Sbjct: 216 KAED 219
Score = 50.8 bits (120), Expect(2) = 5e-26
Identities = 20/32 (62%), Positives = 24/32 (74%)
Frame = -2
Query: 564 KKQSNQRHQQQKRTCMCSPTTHPGSFRCSLHK 469
K ++ + +R CMCSPTTHPGSFRCSLHK
Sbjct: 112 KPSNHHKIPDSRRRCMCSPTTHPGSFRCSLHK 143
>gb|AAM67211.1| serine-rich protein [Arabidopsis thaliana]
Length = 220
Score = 88.6 bits (218), Expect(2) = 2e-25
Identities = 46/64 (71%), Positives = 52/64 (80%)
Frame = -3
Query: 440 YSSNRLNARRSAMTNSLVRIRGVEGEIVRRALSALIRPSSHQQRRRGDFRPRPSRLSVMS 261
Y++N LN RRSAMTNSLVRI GVEGE VRRAL+ LIRPSSHQ +RR + PR SRL+ MS
Sbjct: 156 YTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215
Query: 260 KAAD 249
KA D
Sbjct: 216 KAED 219
Score = 49.3 bits (116), Expect(2) = 2e-25
Identities = 19/21 (90%), Positives = 20/21 (94%)
Frame = -2
Query: 531 KRTCMCSPTTHPGSFRCSLHK 469
+R CMCSPTTHPGSFRCSLHK
Sbjct: 123 RRRCMCSPTTHPGSFRCSLHK 143
>gb|AAN62344.1|AF506028_11 CTV.15 [Poncirus trifoliata]
Length = 206
Score = 107 bits (267), Expect = 1e-22
Identities = 60/90 (66%), Positives = 69/90 (76%)
Frame = -3
Query: 518 CVRRRRTLARSDAVSTKASAHTPPRRYSSNRLNARRSAMTNSLVRIRGVEGEIVRRALSA 339
C +RT + S T +S+H YSS+RLN RRSAMTNSLVRI GVEGE+V+RAL+A
Sbjct: 122 CALHKRTNSYSSH-KTASSSH-----YSSSRLNYRRSAMTNSLVRIGGVEGELVKRALTA 175
Query: 338 LIRPSSHQQRRRGDFRPRPSRLSVMSKAAD 249
LIRPSSHQQRRR F PRPSRLS+MSKA D
Sbjct: 176 LIRPSSHQQRRRAAFEPRPSRLSIMSKADD 205
Score = 56.2 bits (134), Expect = 3e-07
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = -2
Query: 573 QLVKKQSNQRHQQQKRTCMCSPTTHPGSFRCSLHK---GFGSHSAAPLLVEPPQRAQIRH 403
Q+ K + KRTC CSPTTHPGSFRC+LHK + SH A R R
Sbjct: 92 QISKSNNAASFNAPKRTCACSPTTHPGSFRCALHKRTNSYSSHKTASSSHYSSSRLNYRR 151
Query: 402 DELASQDPRRGRGDREESALRVDSSFLASAEEERRLSA 289
+ + R G + E + + S+ ++RR +A
Sbjct: 152 SAMTNSLVRIGGVEGELVKRALTALIRPSSHQQRRRAA 189
>ref|NP_197537.1| putative protein; protein id: At5g20370.1 [Arabidopsis thaliana]
Length = 175
Score = 48.5 bits (114), Expect(2) = 4e-13
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -2
Query: 543 HQQQKRTCMCSPTTHPGSFRCSLHK 469
+ Q KR C+CSPTTHPGSFRCS H+
Sbjct: 64 NHQTKRKCLCSPTTHPGSFRCSFHR 88
Score = 47.4 bits (111), Expect(2) = 4e-13
Identities = 27/51 (52%), Positives = 34/51 (65%), Gaps = 1/51 (1%)
Frame = -3
Query: 425 LNARRSAMTNSLVRIRGVEGEIVRRALSA-LIRPSSHQQRRRGDFRPRPSR 276
LN R+ A+ NSL +I VE E RR+L+A L +PSS RR +FRPR SR
Sbjct: 119 LNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,633,014
Number of Sequences: 1393205
Number of extensions: 13265710
Number of successful extensions: 50109
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 44281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49816
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
