Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001857A_C01 KMC001857A_c01
(757 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565899.1| expressed protein; protein id: At2g39050.1, sup... 175 7e-43
pir||E84812 hypothetical protein At2g39050 [imported] - Arabidop... 175 7e-43
dbj|BAB16331.1| putative r40c1 protein [Oryza sativa (japonica c... 167 3e-40
pir||T03960 r40g2 protein - rice (fragment) gi|1658313|emb|CAA70... 162 4e-39
pir||T03962 r40g3 protein - rice gi|1658315|emb|CAA70175.1| osr4... 162 4e-39
>ref|NP_565899.1| expressed protein; protein id: At2g39050.1, supported by cDNA:
39558., supported by cDNA: gi_15724196, supported by
cDNA: gi_20147402 [Arabidopsis thaliana]
gi|15724197|gb|AAL06490.1|AF411801_1 At2g39050/T7F6.22
[Arabidopsis thaliana] gi|20147403|gb|AAM10411.1|
At2g39050/T7F6.22 [Arabidopsis thaliana]
gi|20197446|gb|AAC79615.2| expressed protein
[Arabidopsis thaliana] gi|21593493|gb|AAM65460.1|
unknown [Arabidopsis thaliana]
Length = 317
Score = 175 bits (443), Expect = 7e-43
Identities = 79/105 (75%), Positives = 89/105 (84%)
Frame = -1
Query: 757 DEKYSTRVKDAERCPAFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDL 578
DEKYST+VKDA+ P F+LVNKATGEA+KHS+G +HPV LI Y PD LDES+LWTESKD
Sbjct: 205 DEKYSTKVKDADGHPCFALVNKATGEAMKHSVGATHPVHLIRYVPDKLDESVLWTESKDF 264
Query: 577 GDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTIVLWQWNKGDN 443
GD YR++RMVNN LN+DAYHGD SGGV DGTTIVLW WNKGDN
Sbjct: 265 GDGYRTIRMVNNTRLNVDAYHGDSKSGGVRDGTTIVLWDWNKGDN 309
>pir||E84812 hypothetical protein At2g39050 [imported] - Arabidopsis thaliana
Length = 326
Score = 175 bits (443), Expect = 7e-43
Identities = 79/105 (75%), Positives = 89/105 (84%)
Frame = -1
Query: 757 DEKYSTRVKDAERCPAFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDL 578
DEKYST+VKDA+ P F+LVNKATGEA+KHS+G +HPV LI Y PD LDES+LWTESKD
Sbjct: 205 DEKYSTKVKDADGHPCFALVNKATGEAMKHSVGATHPVHLIRYVPDKLDESVLWTESKDF 264
Query: 577 GDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTIVLWQWNKGDN 443
GD YR++RMVNN LN+DAYHGD SGGV DGTTIVLW WNKGDN
Sbjct: 265 GDGYRTIRMVNNTRLNVDAYHGDSKSGGVRDGTTIVLWDWNKGDN 309
>dbj|BAB16331.1| putative r40c1 protein [Oryza sativa (japonica cultivar-group)]
Length = 268
Score = 167 bits (422), Expect(2) = 3e-40
Identities = 73/105 (69%), Positives = 90/105 (85%)
Frame = -1
Query: 757 DEKYSTRVKDAERCPAFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDL 578
D KYSTRVKD E PA +LVNKATG+A+KHSIG+SHPVRL+ Y P+Y+DES+LWTES+D+
Sbjct: 156 DMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDV 215
Query: 577 GDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTIVLWQWNKGDN 443
G +R +RMVNNI+LN DA HGDK+ GGV DGTT+VLW+W +GDN
Sbjct: 216 GSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLVLWEWCEGDN 260
Score = 20.8 bits (42), Expect(2) = 3e-40
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -2
Query: 441 QRWKIIPY 418
QRWKI+P+
Sbjct: 261 QRWKIVPW 268
>pir||T03960 r40g2 protein - rice (fragment) gi|1658313|emb|CAA70174.1| osr40g2
[Oryza sativa (indica cultivar-group)]
Length = 343
Score = 162 bits (411), Expect = 4e-39
Identities = 69/105 (65%), Positives = 89/105 (84%)
Frame = -1
Query: 757 DEKYSTRVKDAERCPAFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDL 578
D ++ST+VKD E PAF+LVNKATG A+KHS+G+SHPV+L+P+ P+Y D S+LWTESKD+
Sbjct: 58 DMRFSTKVKDGEGMPAFALVNKATGLAVKHSLGQSHPVKLVPFNPEYEDASVLWTESKDV 117
Query: 577 GDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTIVLWQWNKGDN 443
G +R +RMVNN LN+DA+HGDK+ GGV DGTT+VLW+W KGDN
Sbjct: 118 GKGFRCIRMVNNTRLNLDAFHGDKDHGGVRDGTTVVLWEWCKGDN 162
Score = 157 bits (397), Expect = 2e-37
Identities = 66/105 (62%), Positives = 86/105 (81%)
Frame = -1
Query: 757 DEKYSTRVKDAERCPAFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDL 578
D ++S +++D E PAF+LVNK TGEAIKHS G+ HPV+L+PY P+Y DES+LW ESK +
Sbjct: 231 DMRHSNKIRDEEGYPAFALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDESVLWRESKHV 290
Query: 577 GDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTIVLWQWNKGDN 443
G +R +RMVNNI+LN DA+HGDK+ GG+HDGT IVLW+W +GDN
Sbjct: 291 GKGFRCIRMVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDN 335
>pir||T03962 r40g3 protein - rice gi|1658315|emb|CAA70175.1| osr40g3 [Oryza
sativa (indica cultivar-group)]
Length = 204
Score = 162 bits (411), Expect = 4e-39
Identities = 70/105 (66%), Positives = 90/105 (85%)
Frame = -1
Query: 757 DEKYSTRVKDAERCPAFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDL 578
D ++ST +KD E PAF+LVNKATG+AIKHS+G+SHPVRL+PY P+ +DES+LWTES+D+
Sbjct: 91 DMRWSTSIKDEEGYPAFALVNKATGQAIKHSLGQSHPVRLVPYNPEVMDESVLWTESRDV 150
Query: 577 GDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTIVLWQWNKGDN 443
G+ +R +RMVNNI+LN DA+HGDK GGV DGT IVLW+W +GDN
Sbjct: 151 GNGFRCIRMVNNIYLNFDAFHGDKYHGGVRDGTDIVLWKWCEGDN 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 664,935,863
Number of Sequences: 1393205
Number of extensions: 14474868
Number of successful extensions: 30650
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 29137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30515
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
