>KMC001854A_C01 KMC001854A_c01
tttttttgGGTGAAAAGAGTAGGGGATTTATTTCAAATTGGGATTTATCATCCAATCACA
ATTAGTCTTTAGCATTTCCCATAACTACATAAAGGGATTCATCGATTTCTCGGCAAGTAC
TTTTTCTAACTCAATTATTACATGAATACAAAAGACATATTAAACGAAAAAAAAAAATTC
AACTACTTTGGAAGGTCAACCTTCTTGGTAACAATTAATTATTAATTAATACCAGCAACA
AAATAAATTTAAGGTCCATCGGTCAGCATCGGCCTATCAAATTACAGATATCTGAACATT
CCACCAAACTTCTAATGTTAAGAGGGCCTTCTCCTTCGCCGCCTCGGATACAAGTGTTGA
CACACTTAACTGTGCAGGACTCAGCTTTCCTTGACTTGGGTTTTTGTATCTTAGGTTTCT
TGCAGTCA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001854A_C01 KMC001854A_c01
         (428 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_565196.1| Expressed protein; protein id: At1g78995.1, sup...    88  3e-17
pir||T01056 hypothetical protein YUP8H12R.39 - Arabidopsis thali...    73  7e-13
ref|XP_109557.1| Nik related kinase [Mus musculus]                     32  1.8
ref|NP_038752.1| Nik related kinase [Mus musculus] gi|6009519|db...    32  1.8
dbj|BAA87066.1| Nck-interacting kinase-like embryo specific kina...    32  1.8

>ref|NP_565196.1| Expressed protein; protein id: At1g78995.1, supported by cDNA:
           2681. [Arabidopsis thaliana] gi|21554958|gb|AAM63739.1|
           unknown [Arabidopsis thaliana]
           gi|22531253|gb|AAM97130.1| expressed protein
           [Arabidopsis thaliana]
          Length = 159

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 42/67 (62%), Positives = 47/67 (69%), Gaps = 15/67 (22%)
 Frame = -2

Query: 427 DCKKPKIQKPKSRKAESCTVKCVNTCIRGGEGEGPLNIR---------------SLVECS 293
           DCKK +IQ+PKS+ AE CTVKCVNTCIR G+GEGP+NIR                LVECS
Sbjct: 87  DCKKQRIQRPKSKNAEKCTVKCVNTCIRSGDGEGPINIRRPLVVFKQGFRSRNYCLVECS 146

Query: 292 DICNLIG 272
           DICNLIG
Sbjct: 147 DICNLIG 153

>pir||T01056 hypothetical protein YUP8H12R.39 - Arabidopsis thaliana
           gi|3152598|gb|AAC17079.1| Contains similarity to C2-HC
           type zinc finger protein C.e-MyT1 gb|U67079 from C.
           elegans and to hypersensitivity-related gene 201 isolog
           T28M21.14 from A. thaliana BAC gb|AF002109. [Arabidopsis
           thaliana]
          Length = 572

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 30/39 (76%), Positives = 35/39 (88%)
 Frame = -2

Query: 427 DCKKPKIQKPKSRKAESCTVKCVNTCIRGGEGEGPLNIR 311
           DCKK +IQ+PKS+ AE CTVKCVNTCIR G+GEGP+NIR
Sbjct: 32  DCKKQRIQRPKSKNAEKCTVKCVNTCIRSGDGEGPINIR 70

>ref|XP_109557.1| Nik related kinase [Mus musculus]
          Length = 1206

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/93 (24%), Positives = 46/93 (48%), Gaps = 6/93 (6%)
 Frame = +3

Query: 66   SLAFPI--TT*RDSSISRQVLFLTQLLHEYKRHIKRKKKIQLLWKVNLL---GNN*LLIN 230
            ++ FPI  ++ R S     + + + +LH Y++    +     LW VNLL    ++  L++
Sbjct: 855  TMGFPIGRSSPRGSDFGSDISYNSPILHVYEKDFSSEVYCGSLWGVNLLLGTQSHLYLMD 914

Query: 231  TSNKINLRSIGQHRPIK-LQISEHSTKLLMLRG 326
             S K  +  + + RP + +Q+ E    L+ + G
Sbjct: 915  RSGKAEIVKLIKRRPFRQIQVVEQLNLLITISG 947

>ref|NP_038752.1| Nik related kinase [Mus musculus] gi|6009519|dbj|BAA84943.1|
            NIK-related kinase [Mus musculus]
          Length = 1455

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/93 (24%), Positives = 46/93 (48%), Gaps = 6/93 (6%)
 Frame = +3

Query: 66   SLAFPI--TT*RDSSISRQVLFLTQLLHEYKRHIKRKKKIQLLWKVNLL---GNN*LLIN 230
            ++ FPI  ++ R S     + + + +LH Y++    +     LW VNLL    ++  L++
Sbjct: 1104 TMGFPIGRSSPRGSDFGSDISYNSPILHVYEKDFSSEVYCGSLWGVNLLLGTQSHLYLMD 1163

Query: 231  TSNKINLRSIGQHRPIK-LQISEHSTKLLMLRG 326
             S K  +  + + RP + +Q+ E    L+ + G
Sbjct: 1164 RSGKAEIVKLIKRRPFRQIQVVEQLNLLITISG 1196

>dbj|BAA87066.1| Nck-interacting kinase-like embryo specific kinase [Mus musculus]
          Length = 1455

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/93 (24%), Positives = 46/93 (48%), Gaps = 6/93 (6%)
 Frame = +3

Query: 66   SLAFPI--TT*RDSSISRQVLFLTQLLHEYKRHIKRKKKIQLLWKVNLL---GNN*LLIN 230
            ++ FPI  ++ R S     + + + +LH Y++    +     LW VNLL    ++  L++
Sbjct: 1104 TMGFPIGRSSPRGSDFGSDISYNSPILHVYEKDFSSEVYCGSLWGVNLLLGTQSHLYLMD 1163

Query: 231  TSNKINLRSIGQHRPIK-LQISEHSTKLLMLRG 326
             S K  +  + + RP + +Q+ E    L+ + G
Sbjct: 1164 RSGKAEIVKLIKRRPFRQIQVVEQLNLLITISG 1196

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,205,459
Number of Sequences: 1393205
Number of extensions: 6519357
Number of successful extensions: 14692
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14685
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GENf020a05 BP059196 1 301 2 GNf052d02 BP071228 9 432 3 SPDL024a10_f BP053471 112 250

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