Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001849A_C01 KMC001849A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12180 probable transcription factor - fava bean gi|2104681... 165 4e-40
dbj|BAB84432.1| putative nuclear RNA binding protein A [Oryza sa... 133 2e-30
gb|AAF14245.1|AF110229_1 nuclear RNA binding protein B [Spinacia... 129 3e-29
dbj|BAB78636.1| P0681B11.2 [Oryza sativa (japonica cultivar-grou... 118 7e-26
gb|AAF14244.1|AF110228_1 nuclear RNA binding protein A [Spinacia... 116 2e-25
>pir||T12180 probable transcription factor - fava bean
gi|2104681|emb|CAA66481.1| transcription factor [Vicia
faba]
Length = 370
Score = 165 bits (418), Expect = 4e-40
Identities = 84/101 (83%), Positives = 89/101 (87%), Gaps = 2/101 (1%)
Frame = -3
Query: 610 SMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAEGETYYPSG--R 437
+MQ LSCKKDN +IFAKLGSDKDKRKEAF+KEEKAKKSVSINEFLKPAEGE YY G
Sbjct: 271 TMQALSCKKDNFEIFAKLGSDKDKRKEAFDKEEKAKKSVSINEFLKPAEGEGYYNQGGRG 330
Query: 436 GRGRGRGSRGGGGGSFRGNATSNAPAPSIEDPGHFPTLGGK 314
GRGRGRG+RGG GG FRGN+TSN PAPSIEDPGHFPTLG K
Sbjct: 331 GRGRGRGTRGGFGG-FRGNSTSNVPAPSIEDPGHFPTLGAK 370
>dbj|BAB84432.1| putative nuclear RNA binding protein A [Oryza sativa (japonica
cultivar-group)]
Length = 380
Score = 133 bits (335), Expect = 2e-30
Identities = 72/102 (70%), Positives = 81/102 (78%), Gaps = 3/102 (2%)
Frame = -3
Query: 610 SMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAEGETYYPSGRGR 431
SMQPLS KK N++IF KLGSDKDK+KE E++E+AKKSVSINEFLKPAEGE YY GRGR
Sbjct: 279 SMQPLSTKKGNDEIFIKLGSDKDKKKENAERDERAKKSVSINEFLKPAEGERYY-GGRGR 337
Query: 430 GRGRGSRGG---GGGSFRGNATSNAPAPSIEDPGHFPTLGGK 314
GRGRG RGG GGG RG +++ APSIED FPTLGGK
Sbjct: 338 GRGRGDRGGRGYGGGYQRGPYSTS--APSIEDQAQFPTLGGK 377
>gb|AAF14245.1|AF110229_1 nuclear RNA binding protein B [Spinacia oleracea]
Length = 240
Score = 129 bits (324), Expect = 3e-29
Identities = 69/99 (69%), Positives = 78/99 (78%)
Frame = -3
Query: 610 SMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAEGETYYPSGRGR 431
SMQ LS ++D++ +F KLGSDKDK+KEA EKE K KKSVSINEFLKPAEGE + GRGR
Sbjct: 144 SMQQLSKQQDDSSVFIKLGSDKDKKKEALEKE-KVKKSVSINEFLKPAEGERFGGRGRGR 202
Query: 430 GRGRGSRGGGGGSFRGNATSNAPAPSIEDPGHFPTLGGK 314
G GRGSRGG G GN T +APAP+I DPG FPTLGGK
Sbjct: 203 G-GRGSRGGEYGGGGGNRTYSAPAPAIGDPGEFPTLGGK 240
>dbj|BAB78636.1| P0681B11.2 [Oryza sativa (japonica cultivar-group)]
gi|20161049|dbj|BAB89981.1| putative putative nuclear
RNA binding protein A [Oryza sativa (japonica
cultivar-group)]
Length = 355
Score = 118 bits (295), Expect = 7e-26
Identities = 64/102 (62%), Positives = 76/102 (73%), Gaps = 3/102 (2%)
Frame = -3
Query: 610 SMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAEGETYY-PSGRG 434
SMQ LS KKD++++F KLGSDKDK+KE E++E+ +KS+SINEFLKPAEGE YY P GRG
Sbjct: 253 SMQQLSVKKDSDEVFIKLGSDKDKKKENVERDERTRKSLSINEFLKPAEGERYYSPGGRG 312
Query: 433 RGRGRGSRGGGGGSFRGNATSNAP--APSIEDPGHFPTLGGK 314
RGRGRG RG GG FR +S P AP IED FP L G+
Sbjct: 313 RGRGRG-RGDRGG-FRDGYSSRGPVAAPRIEDQAQFPGLAGR 352
>gb|AAF14244.1|AF110228_1 nuclear RNA binding protein A [Spinacia oleracea]
Length = 356
Score = 116 bits (291), Expect = 2e-25
Identities = 63/100 (63%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = -3
Query: 610 SMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAEGETYYPSGRGR 431
SMQ + KK ++++F +L SDKDK+KEA EKEEKAKKSVSINEFL+PAEG Y GR
Sbjct: 258 SMQLKTKKKVDDEVFIQLNSDKDKKKEAAEKEEKAKKSVSINEFLRPAEGGDQYQRRGGR 317
Query: 430 GR-GRGSRGGGGGSFRGNATSNAPAPSIEDPGHFPTLGGK 314
GR GRG RGG GG G ++A AP IEDP FPTLGGK
Sbjct: 318 GRGGRGGRGGNGGG--GYGMNHATAPKIEDPNQFPTLGGK 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,895,566
Number of Sequences: 1393205
Number of extensions: 13784735
Number of successful extensions: 140621
Number of sequences better than 10.0: 566
Number of HSP's better than 10.0 without gapping: 68588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116771
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
