Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001848A_C02 KMC001848A_c02
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563777.1| expressed protein; protein id: At1g07040.1, sup... 117 1e-35
gb|AAN05517.1| unknown protein [Oryza sativa (japonica cultivar-... 102 4e-30
ref|NP_174022.1| unknown protein; protein id: At1g27020.1 [Arabi... 83 2e-20
ref|NP_564270.1| expressed protein; protein id: At1g27030.1, sup... 80 3e-19
gb|ZP_00020321.1| hypothetical protein [Chloroflexus aurantiacus] 71 1e-17
>ref|NP_563777.1| expressed protein; protein id: At1g07040.1, supported by cDNA:
36434. [Arabidopsis thaliana] gi|25406951|pir||B86205
hypothetical protein [imported] - Arabidopsis thaliana
gi|8954042|gb|AAF82216.1|AC067971_24 ESTs gb|AI993254,
gb|T76141 and gb|AA404864 come from this gene.
[Arabidopsis thaliana] gi|21593127|gb|AAM65076.1|
unknown [Arabidopsis thaliana]
gi|27311555|gb|AAO00743.1| expressed protein
[Arabidopsis thaliana]
Length = 371
Score = 117 bits (293), Expect(2) = 1e-35
Identities = 56/71 (78%), Positives = 63/71 (87%)
Frame = -1
Query: 553 HRLKTHLRDIKTLNQFIEESGFRLNSEGGVLKVSPDGLLLQSSTVADSVSFPFSDGLTKS 374
HRLK+HL IK LNQF+EE G +LNSEGGVLKVSPDG L QSSTVADS+SF F+DG+TKS
Sbjct: 256 HRLKSHLNKIKKLNQFLEEKGIKLNSEGGVLKVSPDGGLQQSSTVADSISFKFADGVTKS 315
Query: 373 VPCSYIEFAER 341
+PCSYIEFAER
Sbjct: 316 IPCSYIEFAER 326
Score = 53.9 bits (128), Expect(2) = 1e-35
Identities = 23/35 (65%), Positives = 31/35 (87%)
Frame = -3
Query: 320 QNLPDTEVKEFHRRDGFEVASADKIFESTSKEPVS 216
QN+P++E++E HRRDGFEV +ADKIFEST +E +S
Sbjct: 333 QNIPESEIQESHRRDGFEVGNADKIFESTFQEQLS 367
>gb|AAN05517.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 317
Score = 102 bits (255), Expect(2) = 4e-30
Identities = 48/71 (67%), Positives = 60/71 (83%)
Frame = -1
Query: 553 HRLKTHLRDIKTLNQFIEESGFRLNSEGGVLKVSPDGLLLQSSTVADSVSFPFSDGLTKS 374
HRL + +R I N+F+E++GF+LNSEGG+LKVSPDGLL QSSTVADS F F+DG+T+S
Sbjct: 202 HRLISDIRSINKFNKFVEDNGFKLNSEGGILKVSPDGLLQQSSTVADSALFTFADGITES 261
Query: 373 VPCSYIEFAER 341
+P SYIEFAER
Sbjct: 262 IPRSYIEFAER 272
Score = 50.1 bits (118), Expect(2) = 4e-30
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = -3
Query: 320 QNLPDTEVKEFHRRDGFEVASADKIFESTSKEPVS 216
++LP+ EV E HRRDGFEV +ADKIFESTS + ++
Sbjct: 279 KDLPNDEVNEHHRRDGFEVGNADKIFESTSNDQLT 313
>ref|NP_174022.1| unknown protein; protein id: At1g27020.1 [Arabidopsis thaliana]
gi|25368615|pir||B86397 protein T7N9.8 [imported] -
Arabidopsis thaliana gi|8778853|gb|AAF79852.1|AC000348_5
T7N9.8 [Arabidopsis thaliana] gi|18175958|gb|AAL59958.1|
unknown protein [Arabidopsis thaliana]
gi|21436365|gb|AAM51352.1| unknown protein [Arabidopsis
thaliana]
Length = 308
Score = 82.8 bits (203), Expect(2) = 2e-20
Identities = 39/71 (54%), Positives = 51/71 (70%)
Frame = -1
Query: 553 HRLKTHLRDIKTLNQFIEESGFRLNSEGGVLKVSPDGLLLQSSTVADSVSFPFSDGLTKS 374
HRLK DIK + ++ EE+GF LN +GGVLKVS D LLLQ S +++ + F+DG+T+
Sbjct: 199 HRLKHRFSDIKCVKEYFEENGFELNKDGGVLKVSEDSLLLQVSAMSEKLVVEFADGVTQI 258
Query: 373 VPCSYIEFAER 341
VP SYIEF ER
Sbjct: 259 VPASYIEFVER 269
Score = 37.7 bits (86), Expect(2) = 2e-20
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3
Query: 320 QNLPDTEVKEFHRRDGFEVASADKIFEST 234
+++P E+KEFHRR+G E ASA I EST
Sbjct: 276 KDMPCDEIKEFHRREGLEQASAYHIMEST 304
>ref|NP_564270.1| expressed protein; protein id: At1g27030.1, supported by cDNA:
gi_14517457 [Arabidopsis thaliana]
gi|8778854|gb|AAF79853.1|AC000348_6 T7N9.9 [Arabidopsis
thaliana] gi|14517458|gb|AAK62619.1| At1g27030/T7N9_9
[Arabidopsis thaliana] gi|21360451|gb|AAM47341.1|
At1g27030/T7N9_9 [Arabidopsis thaliana]
Length = 310
Score = 80.5 bits (197), Expect(2) = 3e-19
Identities = 36/71 (50%), Positives = 52/71 (72%)
Frame = -1
Query: 553 HRLKTHLRDIKTLNQFIEESGFRLNSEGGVLKVSPDGLLLQSSTVADSVSFPFSDGLTKS 374
HR K DIK + Q +EE GF+LNS+G +LKVS DGLL Q S++++ + F+DG+T++
Sbjct: 199 HRFKHRFSDIKFVKQRLEEKGFKLNSDGEILKVSQDGLLFQVSSISERLPVTFADGVTET 258
Query: 373 VPCSYIEFAER 341
+P SYIEF +R
Sbjct: 259 IPASYIEFTQR 269
Score = 35.8 bits (81), Expect(2) = 3e-19
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = -3
Query: 320 QNLPDTEVKEFHRRDGFEVASADKIFEST 234
+++P E+KEFHRR+ FE+ +A+ + EST
Sbjct: 276 KDVPLDEIKEFHRREAFELDNANHVMEST 304
>gb|ZP_00020321.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 222
Score = 71.2 bits (173), Expect(2) = 1e-17
Identities = 36/71 (50%), Positives = 44/71 (61%)
Frame = -1
Query: 553 HRLKTHLRDIKTLNQFIEESGFRLNSEGGVLKVSPDGLLLQSSTVADSVSFPFSDGLTKS 374
H L T I N F+E GF+LN GG +KVSPDG LLQSSTVA+ + F+ G
Sbjct: 107 HNLPTGYNTIADFNAFLERHGFKLNDAGGKIKVSPDGKLLQSSTVAEMIWAEFAGGERHQ 166
Query: 373 VPCSYIEFAER 341
+ SY+EFAER
Sbjct: 167 IAGSYVEFAER 177
Score = 39.7 bits (91), Expect(2) = 1e-17
Identities = 17/28 (60%), Positives = 22/28 (77%)
Frame = -3
Query: 317 NLPDTEVKEFHRRDGFEVASADKIFEST 234
+LP E++ HRR+GFE +ADKIFEST
Sbjct: 185 HLPPHELRREHRREGFEAGNADKIFEST 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,504,060
Number of Sequences: 1393205
Number of extensions: 8892967
Number of successful extensions: 24431
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24428
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
