Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001845A_C01 KMC001845A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200764.1| putative protein; protein id: At5g59560.1, supp... 174 1e-42
dbj|BAB28374.1| unnamed protein product [Mus musculus] 79 5e-14
ref|XP_132262.2| RIKEN cDNA 2810002G02 [Mus musculus] 79 5e-14
gb|AAH30678.1| Unknown (protein for IMAGE:1244520) [Mus musculus] 79 5e-14
gb|AAO52500.1| similar to Homo sapiens (Human). BK1048E9.3 (Nove... 67 3e-10
>ref|NP_200764.1| putative protein; protein id: At5g59560.1, supported by cDNA:
115728. [Arabidopsis thaliana]
gi|8885560|dbj|BAA97490.1|
emb|CAB62929.1~gene_id:F2O15.23~similar to unknown
protein [Arabidopsis thaliana]
gi|21536947|gb|AAM61288.1| unknown [Arabidopsis
thaliana] gi|25527089|gb|AAM97478.1| sensitivity to red
light reduced protein [Arabidopsis thaliana]
Length = 275
Score = 174 bits (440), Expect = 1e-42
Identities = 81/134 (60%), Positives = 104/134 (77%)
Frame = -2
Query: 637 IEVFDPIISVTESRVLEALGCSVMSINEHGRREALSPTMFFMPHCEAELYNNLLQANWKL 458
IEVFDP++S TES LE+LGCSV+S+NE RREAL PT+FFMPHCEA LY+NLLQANW++
Sbjct: 138 IEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEANLYSNLLQANWRM 197
Query: 457 NNLKNMVLFGNSFEEYEQHASICKYSPIINSMGHVLAARRFTKEFRIETISDDYYNAFHD 278
+ L + LFGNSF+ YE+ S + +I + ++AA+R T EF IET SDDY+ AFHD
Sbjct: 198 DRLSKIALFGNSFQMYEEQVSF--DAEVICATKRIIAAQRVTSEFAIETESDDYFAAFHD 255
Query: 277 SSWHFFSPVLESDL 236
SSWHFFS ++S+L
Sbjct: 256 SSWHFFSSGIDSEL 269
>dbj|BAB28374.1| unnamed protein product [Mus musculus]
Length = 243
Score = 79.0 bits (193), Expect = 5e-14
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = -2
Query: 631 VFDPIISVTESRVLEALGCSVMSINEHGRREALS-PTMFFMPHCEAELYNNLLQANWKLN 455
V+DP+ S TE VL +LG +V+S NE G+R PT+F+MPHC LYNNLL +NW +
Sbjct: 141 VYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSAD 200
Query: 454 NLKNMVLFGNSFEEYEQ 404
L +++ GNSF E+
Sbjct: 201 ALSRVLIIGNSFRGLEE 217
>ref|XP_132262.2| RIKEN cDNA 2810002G02 [Mus musculus]
Length = 249
Score = 79.0 bits (193), Expect = 5e-14
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = -2
Query: 631 VFDPIISVTESRVLEALGCSVMSINEHGRREALS-PTMFFMPHCEAELYNNLLQANWKLN 455
V+DP+ S TE VL +LG +V+S NE G+R PT+F+MPHC LYNNLL +NW +
Sbjct: 147 VYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSAD 206
Query: 454 NLKNMVLFGNSFEEYEQ 404
L +++ GNSF E+
Sbjct: 207 ALSRVLIIGNSFRGLEE 223
>gb|AAH30678.1| Unknown (protein for IMAGE:1244520) [Mus musculus]
Length = 124
Score = 79.0 bits (193), Expect = 5e-14
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = -2
Query: 631 VFDPIISVTESRVLEALGCSVMSINEHGRREALS-PTMFFMPHCEAELYNNLLQANWKLN 455
V+DP+ S TE VL +LG +V+S NE G+R PT+F+MPHC LYNNLL +NW +
Sbjct: 22 VYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSAD 81
Query: 454 NLKNMVLFGNSFEEYEQ 404
L +++ GNSF E+
Sbjct: 82 ALSRVLIIGNSFRGLEE 98
>gb|AAO52500.1| similar to Homo sapiens (Human). BK1048E9.3 (Novel protein)
[Dictyostelium discoideum]
Length = 227
Score = 66.6 bits (161), Expect = 3e-10
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Frame = -2
Query: 637 IEVFDPIISVTESRVLEALGCSVMSINEHGRREALSP------TMFFMPHCEAELYNNLL 476
I ++DP+++ E +++ +G ++ INE G+R+A + T+F+MP C +LY+N+L
Sbjct: 72 IYIYDPVMNNLEKQLISKIGFKLIEINEEGKRKANTTNNDENFTIFYMPFCGRKLYDNVL 131
Query: 475 QANWKLNNLKNMVLFGNSFEEY--------EQHASICKYSPIINSMGHVLAARRFTKEFR 320
ANW+ L N+++ GNSF Y E H + +L +T +F
Sbjct: 132 WANWE--TLSNIIIIGNSFNLYIDSINRVEEDHLPFSYTTKTFGIHDELLFPNNYTTQF- 188
Query: 319 IETISDDYYNAFHDSSWHFF 260
FHD + H F
Sbjct: 189 ----------IFHDLAIHLF 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,631,492
Number of Sequences: 1393205
Number of extensions: 14255767
Number of successful extensions: 125298
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86435
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
