Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001844A_C01 KMC001844A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174516.1| ribose-phosphate pyrophosphokinase 2; protein i... 278 4e-82
pir||S71262 ribose-phosphate diphosphokinase (EC 2.7.6.1) isofor... 278 4e-82
emb|CAB43599.1| phosphoribosyl pyrophosphate synthase [Spinacia ... 273 2e-80
gb|AAO00875.1| Unknown protein [Arabidopsis thaliana] 270 1e-79
ref|NP_181082.1| phosphoribosyl pyrophosphate synthetase; protei... 270 1e-79
>ref|NP_174516.1| ribose-phosphate pyrophosphokinase 2; protein id: At1g32380.1,
supported by cDNA: gi_16612322 [Arabidopsis thaliana]
gi|12644434|sp|Q42583|KPR2_ARATH Ribose-phosphate
pyrophosphokinase 2 (Phosphoribosyl pyrophosphate
synthetase 2) (PRS II) gi|25288325|pir||G86448
ribose-phosphate diphosphokinase (EC 2.7.6.1) -
Arabidopsis thaliana
gi|8920613|gb|AAF81335.1|AC007767_15 Identical to
ribose-phosphate pyrophosphokinase 2 (phosphoribosyl
pyrophosphate synthetase 2) (PRSII) (fragment) from
Arabidopsis thaliana gb|X92974. It contains a
phosphoribosyl transferase domain PF|00156. ESTs
gb|N65092, gb|AI994187 and gb|AW004531 come from this
gene gi|16612323|gb|AAL27519.1|AF439851_1
At1g32380/F5D14_5 [Arabidopsis thaliana]
gi|21928073|gb|AAM78065.1| At1g32380/F5D14_5
[Arabidopsis thaliana]
Length = 400
Score = 278 bits (711), Expect(2) = 4e-82
Identities = 140/155 (90%), Positives = 146/155 (93%)
Frame = -1
Query: 689 DHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 510
DHV CQPVILDYLASK+ISS DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV
Sbjct: 229 DHVYCQPVILDYLASKSISSEDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 288
Query: 509 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERL 330
AEVMNLIGDVKGKVAVMVDD+IDTAGTI KGAALLHEEGAREVYACCTH VFSPPAIERL
Sbjct: 289 AEVMNLIGDVKGKVAVMVDDIIDTAGTIVKGAALLHEEGAREVYACCTHAVFSPPAIERL 348
Query: 329 SSGLFQEVIITNTIPVPEKNYFPQLTILSRSKPVG 225
SSGL QEVI+TNT+PV EKNYFPQLTILS + +G
Sbjct: 349 SSGLLQEVIVTNTLPVAEKNYFPQLTILSVANLLG 383
Score = 49.3 bits (116), Expect(2) = 4e-82
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -2
Query: 247 LAVANLLGETIWRIHDDSSVSSIF 176
L+VANLLGETIWR+HDDSSVSSIF
Sbjct: 376 LSVANLLGETIWRVHDDSSVSSIF 399
>pir||S71262 ribose-phosphate diphosphokinase (EC 2.7.6.1) isoform II
[validated] - Arabidopsis thaliana (fragment)
gi|1064885|emb|CAA63552.1| phosphoribosyl pyrophosphate
synthetase II [Arabidopsis thaliana]
Length = 312
Score = 278 bits (711), Expect(2) = 4e-82
Identities = 140/155 (90%), Positives = 146/155 (93%)
Frame = -1
Query: 689 DHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 510
DHV CQPVILDYLASK+ISS DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV
Sbjct: 141 DHVYCQPVILDYLASKSISSEDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 200
Query: 509 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERL 330
AEVMNLIGDVKGKVAVMVDD+IDTAGTI KGAALLHEEGAREVYACCTH VFSPPAIERL
Sbjct: 201 AEVMNLIGDVKGKVAVMVDDIIDTAGTIVKGAALLHEEGAREVYACCTHAVFSPPAIERL 260
Query: 329 SSGLFQEVIITNTIPVPEKNYFPQLTILSRSKPVG 225
SSGL QEVI+TNT+PV EKNYFPQLTILS + +G
Sbjct: 261 SSGLLQEVIVTNTLPVAEKNYFPQLTILSVANLLG 295
Score = 49.3 bits (116), Expect(2) = 4e-82
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -2
Query: 247 LAVANLLGETIWRIHDDSSVSSIF 176
L+VANLLGETIWR+HDDSSVSSIF
Sbjct: 288 LSVANLLGETIWRVHDDSSVSSIF 311
>emb|CAB43599.1| phosphoribosyl pyrophosphate synthase [Spinacia oleracea]
Length = 336
Score = 273 bits (697), Expect(2) = 2e-80
Identities = 140/155 (90%), Positives = 146/155 (93%)
Frame = -1
Query: 689 DHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 510
DHV QPVILDYLASKTI S+DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV
Sbjct: 165 DHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 224
Query: 509 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERL 330
AEVMNLIGDVKGKVAVMVDDMIDTAGTI+KGAALLH+EGAREVYAC TH VFSPPAIERL
Sbjct: 225 AEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 284
Query: 329 SSGLFQEVIITNTIPVPEKNYFPQLTILSRSKPVG 225
SSGLFQEVIITNTIPV EKNYFPQLT+LS + +G
Sbjct: 285 SSGLFQEVIITNTIPVLEKNYFPQLTVLSVANLLG 319
Score = 49.3 bits (116), Expect(2) = 2e-80
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = -2
Query: 247 LAVANLLGETIWRIHDDSSVSSIFQ 173
L+VANLLGETIWR+HDD SVSSIFQ
Sbjct: 312 LSVANLLGETIWRVHDDCSVSSIFQ 336
>gb|AAO00875.1| Unknown protein [Arabidopsis thaliana]
Length = 403
Score = 270 bits (690), Expect(2) = 1e-79
Identities = 135/155 (87%), Positives = 143/155 (92%)
Frame = -1
Query: 689 DHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 510
DHV CQPVILDYLASK+I S DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRR GHNV
Sbjct: 232 DHVYCQPVILDYLASKSIPSEDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRSGHNV 291
Query: 509 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERL 330
AEVMNLIGDV+GKVA+MVDDMIDTAGTI KGAALLH+EGAREVYACCTH VFSPPAIERL
Sbjct: 292 AEVMNLIGDVRGKVAIMVDDMIDTAGTIVKGAALLHQEGAREVYACCTHAVFSPPAIERL 351
Query: 329 SSGLFQEVIITNTIPVPEKNYFPQLTILSRSKPVG 225
S GL QEVI+TNT+PV EKNYFPQLTILS + +G
Sbjct: 352 SGGLLQEVIVTNTLPVAEKNYFPQLTILSVANLLG 386
Score = 49.3 bits (116), Expect(2) = 1e-79
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -2
Query: 247 LAVANLLGETIWRIHDDSSVSSIF 176
L+VANLLGETIWR+HDDSSVSSIF
Sbjct: 379 LSVANLLGETIWRVHDDSSVSSIF 402
>ref|NP_181082.1| phosphoribosyl pyrophosphate synthetase; protein id: At2g35390.1
[Arabidopsis thaliana] gi|2833379|sp|Q42581|KPR1_ARATH
Ribose-phosphate pyrophosphokinase 1 (Phosphoribosyl
pyrophosphate synthetase 1) (PRS I)
gi|1076397|pir||S51270 ribose-phosphate diphosphokinase
(EC 2.7.6.1) [validated] - Arabidopsis thaliana
gi|633140|emb|CAA58717.1| phosphoribosyl diphosphate
synthetase; ribose-phosphate pyrophosphokinase
[Arabidopsis thaliana] gi|3608149|gb|AAC36182.1|
phosphoribosyl pyrophosphate synthetase [Arabidopsis
thaliana]
Length = 352
Score = 270 bits (690), Expect(2) = 1e-79
Identities = 135/155 (87%), Positives = 143/155 (92%)
Frame = -1
Query: 689 DHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 510
DHV CQPVILDYLASK+I S DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRR GHNV
Sbjct: 181 DHVYCQPVILDYLASKSIPSEDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRSGHNV 240
Query: 509 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERL 330
AEVMNLIGDV+GKVA+MVDDMIDTAGTI KGAALLH+EGAREVYACCTH VFSPPAIERL
Sbjct: 241 AEVMNLIGDVRGKVAIMVDDMIDTAGTIVKGAALLHQEGAREVYACCTHAVFSPPAIERL 300
Query: 329 SSGLFQEVIITNTIPVPEKNYFPQLTILSRSKPVG 225
S GL QEVI+TNT+PV EKNYFPQLTILS + +G
Sbjct: 301 SGGLLQEVIVTNTLPVAEKNYFPQLTILSVANLLG 335
Score = 49.3 bits (116), Expect(2) = 1e-79
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -2
Query: 247 LAVANLLGETIWRIHDDSSVSSIF 176
L+VANLLGETIWR+HDDSSVSSIF
Sbjct: 328 LSVANLLGETIWRVHDDSSVSSIF 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,189,224
Number of Sequences: 1393205
Number of extensions: 11743170
Number of successful extensions: 31768
Number of sequences better than 10.0: 397
Number of HSP's better than 10.0 without gapping: 30325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31505
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
