Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001841A_C01 KMC001841A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197790.1| septum site-determining MinD (dbj|BAA90261.1); ... 206 2e-52
gb|AAG10431.1| minD [Tagetes erecta] 184 1e-45
dbj|BAA90628.1| Similar to Chlorella vulgaris C-27 chloroplast D... 176 3e-43
ref|NP_045875.1| septum site-determining protein [Chlorella vulg... 114 8e-25
gb|AAN33031.1| cell division inhibitor MinD [Chlamydomonas reinh... 114 1e-24
>ref|NP_197790.1| septum site-determining MinD (dbj|BAA90261.1); protein id:
At5g24020.1, supported by cDNA: gi_6759276 [Arabidopsis
thaliana] gi|6759277|dbj|BAA90261.1| MinD [Arabidopsis
thaliana] gi|9758226|dbj|BAB08725.1| septum
site-determining MinD [Arabidopsis thaliana]
gi|25083076|gb|AAN72038.1| septum site-determining MinD
[Arabidopsis thaliana]
Length = 326
Score = 206 bits (524), Expect = 2e-52
Identities = 105/110 (95%), Positives = 108/110 (97%), Gaps = 1/110 (0%)
Frame = -3
Query: 631 VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLPLLGMIPEDSEVIRSTNR 452
VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGL LLG+IPEDSEVIRSTNR
Sbjct: 217 VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTNR 276
Query: 451 GFPLVLNKPPTLAGLAFEQAAWRLVEQDTMQAVMVEEEP-KRGFFSFFGG 305
GFPLVLNKPPTLAGLAFEQAAWRLVEQD+M+AVMVEEEP KRGFFSFFGG
Sbjct: 277 GFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKKRGFFSFFGG 326
>gb|AAG10431.1| minD [Tagetes erecta]
Length = 295
Score = 184 bits (466), Expect = 1e-45
Identities = 97/110 (88%), Positives = 101/110 (91%), Gaps = 1/110 (0%)
Frame = -3
Query: 631 VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLPLLGMIPEDSEVIRSTNR 452
VTGLLECDGIRDIKMIVNRVRTD+I+GEDMMSVLDVQEMLGL LL EVIRSTNR
Sbjct: 187 VTGLLECDGIRDIKMIVNRVRTDLIRGEDMMSVLDVQEMLGLSLLSDT-RGFEVIRSTNR 245
Query: 451 GFPLVLNKPPTLAGLAFEQAAWRLVEQDTMQAVMVEEEP-KRGFFSFFGG 305
GFPLVLNKPPTLAGLAFEQAAWRLVEQD+M+AVMVEEEP KRGFFSFFGG
Sbjct: 246 GFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKKRGFFSFFGG 295
>dbj|BAA90628.1| Similar to Chlorella vulgaris C-27 chloroplast DNA, cell division
inhibitor MinD. (AB001684) [Oryza sativa (japonica
cultivar-group)]
Length = 306
Score = 176 bits (445), Expect = 3e-43
Identities = 88/113 (77%), Positives = 97/113 (84%), Gaps = 4/113 (3%)
Frame = -3
Query: 631 VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLPLLGMIPEDSEVIRSTNR 452
V GLLECDGI+DIK+IVNRVR D++KGEDMMS LDVQEMLGLPLLG++PED+EVIRSTNR
Sbjct: 194 VAGLLECDGIKDIKIIVNRVRPDLVKGEDMMSALDVQEMLGLPLLGVVPEDAEVIRSTNR 253
Query: 451 GFPLVLNKPPTLAGLAFEQAAWRLVEQDTMQAVMVEEE----PKRGFFSFFGG 305
G PLVLN PPT AGLA EQA WRLVE+D M AVMVEE+ K GFFSFFGG
Sbjct: 254 GVPLVLNDPPTPAGLALEQATWRLVERDAMTAVMVEEQERPKKKAGFFSFFGG 306
>ref|NP_045875.1| septum site-determining protein [Chlorella vulgaris]
gi|3024135|sp|P56346|MIND_CHLVU Putative septum
site-determining protein minD gi|7443732|pir||T07303
cell division inhibitor - Chlorella vulgaris chloroplast
gi|2224467|dbj|BAA57951.1| cell division inhibitor MinD
[Chlorella vulgaris]
Length = 282
Score = 114 bits (286), Expect = 8e-25
Identities = 63/105 (60%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Frame = -3
Query: 631 VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLPLLGMIPEDSEVIRSTNR 452
V GLLE +GI ++K++VNRVR DMI+ DMMSV DVQEMLG+PLLG IPED+ VI STN+
Sbjct: 170 VAGLLEANGIYNVKLLVNRVRPDMIQKNDMMSVRDVQEMLGIPLLGAIPEDTSVIISTNK 229
Query: 451 GFPLVLNKPPTLAGLAFEQAAWRLV-EQDTMQAVMVEEEPKRGFF 320
G PLVLNK TL+G+AFE AA RL+ +QD + P++G F
Sbjct: 230 GEPLVLNKKLTLSGIAFENAARRLIGKQDYFIDL---TSPQKGMF 271
>gb|AAN33031.1| cell division inhibitor MinD [Chlamydomonas reinhardtii]
Length = 351
Score = 114 bits (284), Expect = 1e-24
Identities = 63/109 (57%), Positives = 79/109 (71%), Gaps = 1/109 (0%)
Frame = -3
Query: 631 VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLPLLGMIPEDSEVIRSTNR 452
V GLLE +GI ++K++VNRVR DMI+ DMMSV DVQEMLG+PLLG IPED +VI STNR
Sbjct: 241 VAGLLEANGIYNVKLLVNRVRPDMIQKNDMMSVKDVQEMLGIPLLGAIPEDPQVIISTNR 300
Query: 451 GFPLVLNKPPTLAGLAFEQAAWRLV-EQDTMQAVMVEEEPKRGFFSFFG 308
G PLVL K +L+G+AFE AA RL+ +QD + P++G F G
Sbjct: 301 GEPLVLQKQLSLSGIAFENAARRLIGKQDYFVDL---NNPQKGLFQKLG 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,738,391
Number of Sequences: 1393205
Number of extensions: 13577699
Number of successful extensions: 47944
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 43803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47622
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
