Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001837A_C01 KMC001837A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190647.1| putative protein; protein id: At3g50780.1 [Arab... 42 0.006
ref|NP_176570.1| hypothetical protein; protein id: At1g63850.1 [... 40 0.023
ref|NP_566255.1| Expressed protein; protein id: At3g05675.1, sup... 40 0.030
gb|AAM61488.1| unknown [Arabidopsis thaliana] 40 0.030
ref|NP_565358.1| expressed protein; protein id: At2g13690.1, sup... 38 0.11
>ref|NP_190647.1| putative protein; protein id: At3g50780.1 [Arabidopsis thaliana]
gi|7485708|pir||T08399 hypothetical protein F18B3.60 -
Arabidopsis thaliana gi|4835229|emb|CAB42907.1| putative
protein [Arabidopsis thaliana]
gi|27754671|gb|AAO22779.1| unknown protein [Arabidopsis
thaliana] gi|28827604|gb|AAO50646.1| unknown protein
[Arabidopsis thaliana]
Length = 520
Score = 42.4 bits (98), Expect = 0.006
Identities = 31/95 (32%), Positives = 45/95 (46%), Gaps = 1/95 (1%)
Frame = -1
Query: 664 GTILASTQVRRKLVEEWLPVLVVCKDNVSPVSPSNKSLYLEL-EETFLRIISTLPMSDAQ 488
G +L S R L+ WL L ++ + + +S +L EE R I TLP+ D Q
Sbjct: 410 GELLPSKDTRLLLLTTWLQPLF---NDYNWLQHGCRSFDGKLVEEGIGRTILTLPLEDQQ 466
Query: 487 ELLQRCLSFSTRNVEDCPHLVSAFNTWFRRAAQRP 383
+L L + CP+L AF W+RR+ RP
Sbjct: 467 SILLSWLGSFLNGGDGCPNLQRAFEVWWRRSFIRP 501
>ref|NP_176570.1| hypothetical protein; protein id: At1g63850.1 [Arabidopsis
thaliana] gi|25338922|pir||F96663 hypothetical protein
T12P18.13 [imported] - Arabidopsis thaliana
gi|12325010|gb|AAG52452.1|AC010852_9 hypothetical
protein; 43750-42004 [Arabidopsis thaliana]
Length = 548
Score = 40.4 bits (93), Expect = 0.023
Identities = 30/95 (31%), Positives = 44/95 (45%), Gaps = 2/95 (2%)
Frame = -1
Query: 664 GTILASTQVRRKLVEEWLPVLVVCKDNVSPVSPSNKSL--YLELEETFLRIISTLPMSDA 491
G IL +VR L+ WL D+ + ++K L YL +E+ I TLP++
Sbjct: 437 GQILTPKEVRCLLLRNWLTPFY---DDFGWMRRASKGLDRYL-IEDGLSNTILTLPLAWQ 492
Query: 490 QELLQRCLSFSTRNVEDCPHLVSAFNTWFRRAAQR 386
QE + EDCP++ F W+RRA R
Sbjct: 493 QEFFLAWFDRFLNSNEDCPNIQRGFEVWWRRAFWR 527
>ref|NP_566255.1| Expressed protein; protein id: At3g05675.1, supported by cDNA:
121720., supported by cDNA: gi_20259408 [Arabidopsis
thaliana] gi|20259409|gb|AAM14025.1| unknown protein
[Arabidopsis thaliana]
Length = 441
Score = 40.0 bits (92), Expect = 0.030
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Frame = -1
Query: 676 AVCAGTILASTQVRRKLVEEWLPVLVVCKDNV-SPVSPSNKS----------LYLELEET 530
A+ GT++ T R ++V+ WLP + K V SPV ++ ++ LE +
Sbjct: 322 AIGYGTVILPTAKRLQMVKLWLPFVRNTKPLVDSPVREDEENDTVRYKIDGEIWQALESS 381
Query: 529 FLRIISTLPMSDAQELLQRCLSFSTRNVEDCPHLVSAFNTWFRRA 395
F+ II LP +D E+L LS + P L AF W R+
Sbjct: 382 FVSIILALPSADQAEILTEWLSKNGL----YPDLTEAFEVWCYRS 422
>gb|AAM61488.1| unknown [Arabidopsis thaliana]
Length = 441
Score = 40.0 bits (92), Expect = 0.030
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Frame = -1
Query: 676 AVCAGTILASTQVRRKLVEEWLPVLVVCKDNV-SPVSPSNKS----------LYLELEET 530
A+ GT++ T R ++V+ WLP + K V SPV ++ ++ LE +
Sbjct: 322 AIGYGTVILPTAKRLQMVKLWLPFVRNTKPLVDSPVREDEENDTVRYKIDGEIWQALESS 381
Query: 529 FLRIISTLPMSDAQELLQRCLSFSTRNVEDCPHLVSAFNTWFRRA 395
F+ II LP +D E+L LS + P L AF W R+
Sbjct: 382 FVSIILALPSADQAEILTEWLSKNGL----YPDLTEAFEVWCYRS 422
>ref|NP_565358.1| expressed protein; protein id: At2g13690.1, supported by cDNA:
17483. [Arabidopsis thaliana] gi|20197793|gb|AAD28312.2|
expressed protein [Arabidopsis thaliana]
gi|20198052|gb|AAM15372.1| expressed protein
[Arabidopsis thaliana] gi|26450292|dbj|BAC42262.1|
putative f13j11 PRLI-interacting factor G [Arabidopsis
thaliana]
Length = 544
Score = 38.1 bits (87), Expect = 0.11
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -1
Query: 643 QVRRKLVEEWLPVLVVCKDNVSPVSPSNKSLYL-ELEETFLRIISTLPMSDAQELLQRCL 467
+ R LVE W ++V + + K L + E+EE + + TLP+ + ++
Sbjct: 453 EARAGLVEAWFKPMLV---DFGWLQRCKKGLDMREVEEGMGQTLLTLPVKEQYQVFMEWF 509
Query: 466 SFSTRNVEDCPHLVSAFNTWFRRAAQR 386
+ +++ +CP+L AF W+RR+ R
Sbjct: 510 RWFSKHGTECPNLSKAFQIWWRRSFLR 536
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,618,057
Number of Sequences: 1393205
Number of extensions: 12578623
Number of successful extensions: 30212
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30160
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
