Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001836A_C01 KMC001836A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181730.1| unknown protein; protein id: At2g41990.1 [Arabi... 50 1e-11
ref|NP_564495.1| expressed protein; protein id: At1g45688.1, sup... 44 3e-08
ref|NP_199100.1| putative protein; protein id: At5g42860.1 [Arab... 42 1e-07
gb|AAO42869.1| At5g42860 [Arabidopsis thaliana] 42 1e-07
emb|CAB53482.1| CAA30379.1 protein [Oryza sativa] 37 7e-06
>ref|NP_181730.1| unknown protein; protein id: At2g41990.1 [Arabidopsis thaliana]
gi|25408769|pir||F84848 hypothetical protein At2g41990
[imported] - Arabidopsis thaliana
gi|1871184|gb|AAB63544.1| unknown protein [Arabidopsis
thaliana]
Length = 297
Score = 50.4 bits (119), Expect(2) = 1e-11
Identities = 26/42 (61%), Positives = 30/42 (70%)
Frame = -3
Query: 374 LNLTFVVRSRAFILGRLVKSKFYRRIRCSVTLHGNQAWKASS 249
LNLT V+ S+A+ILGRLV SKFY RI CS TL N K+ S
Sbjct: 249 LNLTIVLHSKAYILGRLVTSKFYTRIICSFTLDANHLPKSIS 290
Score = 40.4 bits (93), Expect(2) = 1e-11
Identities = 21/44 (47%), Positives = 26/44 (58%)
Frame = -1
Query: 511 MKEFYQRRNSHRNLTVVVTGHQVPLYGGVSELGNIKEHLDRVSV 380
M +F RN N+ VV GHQ+PLYGGVS HLD +S+
Sbjct: 210 MNKFTVGRNGETNVVTVVQGHQIPLYGGVS------FHLDTLSL 247
>ref|NP_564495.1| expressed protein; protein id: At1g45688.1, supported by cDNA:
8255., supported by cDNA: gi_20466719 [Arabidopsis
thaliana] gi|25405173|pir||A96511 unknown protein
[imported] - Arabidopsis thaliana
gi|12321012|gb|AAG50630.1|AC083835_15 unknown protein
[Arabidopsis thaliana] gi|20466720|gb|AAM20677.1|
unknown protein [Arabidopsis thaliana]
gi|21595730|gb|AAM66126.1| unknown [Arabidopsis
thaliana] gi|23198230|gb|AAN15642.1| unknown protein
[Arabidopsis thaliana]
Length = 342
Score = 44.3 bits (103), Expect(2) = 3e-08
Identities = 17/30 (56%), Positives = 26/30 (86%)
Frame = -3
Query: 374 LNLTFVVRSRAFILGRLVKSKFYRRIRCSV 285
+ L+FVVRSRA++LG+LV+ KFY++I C +
Sbjct: 291 MTLSFVVRSRAYVLGKLVQPKFYKKIECDI 320
Score = 35.0 bits (79), Expect(2) = 3e-08
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 511 MKEFYQRRNSHRNLTVVVTGHQVPLYGGVSEL 416
+K+FYQ R S R + V V G ++PLYG S L
Sbjct: 226 VKKFYQGRKSERTVLVHVIGEKIPLYGSGSTL 257
>ref|NP_199100.1| putative protein; protein id: At5g42860.1 [Arabidopsis thaliana]
gi|9758574|dbj|BAB09187.1|
emb|CAB53482.1~gene_id:MBD2.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 320
Score = 41.6 bits (96), Expect(2) = 1e-07
Identities = 17/30 (56%), Positives = 24/30 (79%)
Frame = -3
Query: 374 LNLTFVVRSRAFILGRLVKSKFYRRIRCSV 285
+ L F VRSRA++LG+LV+ KFY+RI C +
Sbjct: 269 MRLNFTVRSRAYVLGKLVQPKFYKRIVCLI 298
Score = 35.4 bits (80), Expect(2) = 1e-07
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 511 MKEFYQRRNSHRNLTVVVTGHQVPLYGGVSEL 416
+K+FYQ R S R + V V G ++PLYG S L
Sbjct: 205 IKKFYQSRKSQRTVVVNVLGDKIPLYGSGSTL 236
>gb|AAO42869.1| At5g42860 [Arabidopsis thaliana]
Length = 320
Score = 41.6 bits (96), Expect(2) = 1e-07
Identities = 17/30 (56%), Positives = 24/30 (79%)
Frame = -3
Query: 374 LNLTFVVRSRAFILGRLVKSKFYRRIRCSV 285
+ L F VRSRA++LG+LV+ KFY+RI C +
Sbjct: 269 MRLNFTVRSRAYVLGKLVQPKFYKRIVCLI 298
Score = 35.4 bits (80), Expect(2) = 1e-07
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 511 MKEFYQRRNSHRNLTVVVTGHQVPLYGGVSEL 416
+K+FYQ R S R + V V G ++PLYG S L
Sbjct: 205 IKKFYQSRKSQRTVVVNVLGDKIPLYGSGSTL 236
>emb|CAB53482.1| CAA30379.1 protein [Oryza sativa]
Length = 835
Score = 36.6 bits (83), Expect(2) = 7e-06
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 511 MKEFYQRRNSHRNLTVVVTGHQVPLYGG 428
+ +FYQ R+S R ++V V G++VPLYGG
Sbjct: 741 LNKFYQARSSRRTVSVGVMGNKVPLYGG 768
Score = 34.3 bits (77), Expect(2) = 7e-06
Identities = 16/31 (51%), Positives = 20/31 (63%)
Frame = -3
Query: 368 LTFVVRSRAFILGRLVKSKFYRRIRCSVTLH 276
L V SRA++LG LVK KF R I C V ++
Sbjct: 788 LRTTVHSRAYVLGALVKPKFTRAIECKVLMN 818
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,911,272
Number of Sequences: 1393205
Number of extensions: 9578068
Number of successful extensions: 22872
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22871
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
