Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001835A_C01 KMC001835A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190848.1| zinc finger - like protein; protein id: At3g528... 108 6e-23
gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana] g... 108 6e-23
ref|NP_565844.1| expressed protein; protein id: At2g36320.1, sup... 104 1e-21
ref|NP_192941.1| putative protein; protein id: At4g12040.1, supp... 103 4e-21
gb|AAO72541.1| pathogenesis-related protein-like protein [Oryza ... 100 2e-20
>ref|NP_190848.1| zinc finger - like protein; protein id: At3g52800.1, supported by
cDNA: gi_14596166 [Arabidopsis thaliana]
gi|11358932|pir||T49033 zinc finger-like protein -
Arabidopsis thaliana gi|7669954|emb|CAB89241.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 170
Score = 108 bits (271), Expect = 6e-23
Identities = 46/67 (68%), Positives = 54/67 (79%)
Frame = -1
Query: 750 QAAQPNRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVGREAIARENPVVR 571
Q +PNRC TCRKRVGLTGFKCRC FCG HRYPE H CS+DFK+ GRE IA+ NP+V+
Sbjct: 104 QQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVK 163
Query: 570 AEKLRRI 550
A KL++I
Sbjct: 164 AAKLQKI 170
>gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana]
gi|18377546|gb|AAL66939.1| zinc finger-like protein
[Arabidopsis thaliana]
Length = 169
Score = 108 bits (271), Expect = 6e-23
Identities = 46/67 (68%), Positives = 54/67 (79%)
Frame = -1
Query: 750 QAAQPNRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVGREAIARENPVVR 571
Q +PNRC TCRKRVGLTGFKCRC FCG HRYPE H CS+DFK+ GRE IA+ NP+V+
Sbjct: 103 QQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVK 162
Query: 570 AEKLRRI 550
A KL++I
Sbjct: 163 AAKLQKI 169
>ref|NP_565844.1| expressed protein; protein id: At2g36320.1, supported by cDNA:
24255. [Arabidopsis thaliana] gi|25408460|pir||C84779
hypothetical protein At2g36320 [imported] - Arabidopsis
thaliana gi|4510345|gb|AAD21434.1| expressed protein
[Arabidopsis thaliana] gi|21592464|gb|AAM64415.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 161
Score = 104 bits (260), Expect = 1e-21
Identities = 44/64 (68%), Positives = 52/64 (80%)
Frame = -1
Query: 741 QPNRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVGREAIARENPVVRAEK 562
+PNRC CRKRVGLTGF CRC TFCG+HRYPE H C+FDFK+ GRE IA+ NP+V A K
Sbjct: 98 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAK 157
Query: 561 LRRI 550
L++I
Sbjct: 158 LQKI 161
>ref|NP_192941.1| putative protein; protein id: At4g12040.1, supported by cDNA: 45.,
supported by cDNA: gi_13605498 [Arabidopsis thaliana]
gi|7485567|pir||T06611 hypothetical protein F16J13.110 -
Arabidopsis thaliana gi|4586109|emb|CAB40945.1| putative
protein [Arabidopsis thaliana]
gi|7267905|emb|CAB78247.1| putative protein [Arabidopsis
thaliana] gi|13272445|gb|AAK17161.1|AF325093_1 putative
protein [Arabidopsis thaliana]
gi|13605499|gb|AAK32743.1|AF361575_1
AT4g12040/F16J13_110 [Arabidopsis thaliana]
gi|19548019|gb|AAL87373.1| AT4g12040/F16J13_110
[Arabidopsis thaliana] gi|21593800|gb|AAM65767.1|
unknown [Arabidopsis thaliana]
Length = 175
Score = 103 bits (256), Expect = 4e-21
Identities = 42/62 (67%), Positives = 54/62 (86%)
Frame = -1
Query: 735 NRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVGREAIARENPVVRAEKLR 556
NRC +C K+VG+ GFKC+C TFCG+HRYPEKH CSFDFK VGR+AIA+ NP+V+A+K++
Sbjct: 114 NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173
Query: 555 RI 550
RI
Sbjct: 174 RI 175
>gb|AAO72541.1| pathogenesis-related protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 170
Score = 100 bits (250), Expect = 2e-20
Identities = 45/78 (57%), Positives = 59/78 (74%), Gaps = 6/78 (7%)
Frame = -1
Query: 768 TAGPILQAAQP------NRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVG 607
TAGP+ +++ NRC +CR+RVGLTGF+CRC +CGAHRY ++H CSFD+K+
Sbjct: 92 TAGPVESSSKASRSSSVNRCHSCRRRVGLTGFRCRCGELYCGAHRYSDRHDCSFDYKSAA 151
Query: 606 REAIARENPVVRAEKLRR 553
R+AIARENPVVRA K+ R
Sbjct: 152 RDAIARENPVVRAAKIVR 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 702,289,549
Number of Sequences: 1393205
Number of extensions: 16294404
Number of successful extensions: 52152
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 46827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51858
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
