Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001834A_C01 KMC001834A_c01
(368 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB95461.2| hypothetical protein [Trypanosoma brucei] 33 0.69
ref|NP_704500.1| hypothetical protein [Plasmodium falciparum 3D7... 33 0.90
gb|EAA19063.1| hypothetical protein [Plasmodium yoelii yoelii] 33 0.90
ref|NP_245082.1| FtsQ [Pasteurella multocida] gi|12720362|gb|AAK... 32 1.5
dbj|BAB86335.1| LTRPC6 [Homo sapiens] 31 3.4
>emb|CAB95461.2| hypothetical protein [Trypanosoma brucei]
Length = 143
Score = 33.5 bits (75), Expect = 0.69
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 315 SLFLSQC**IHNFLLYVHISFVVCLLFFFFTLQ 217
S FL C + F+L+ SFV C+LFFF LQ
Sbjct: 48 SFFLFPCSHVFRFVLFFFTSFVACVLFFFRHLQ 80
>ref|NP_704500.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499239|emb|CAD51319.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1997
Score = 33.1 bits (74), Expect = 0.90
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 193 KSNMMKASL*GKEKKKQTNNKGYMNIKKKVVYSLTLGEKETESSLYL 333
K+ + + K+KKK+ KGY+N+++K +Y EK SSL L
Sbjct: 1304 KNELQNIYIFKKKKKKKKKKKGYINVQRKAIYK-RKNEKNLFSSLIL 1349
>gb|EAA19063.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 272
Score = 33.1 bits (74), Expect = 0.90
Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Frame = +1
Query: 61 HKLQFHVFCSYSNTIYEK-RKFTSLSM*FQYSWQISEAS*DSQKIKSNMMKASL*GKEKK 237
H L + C YS+ +EK +K+ +L F+Y+ D +K+N ++ + KE K
Sbjct: 18 HSLMAEILCLYSSNAFEKIKKYENL---FKYN--------DCGHVKNNKLEENGIYKELK 66
Query: 238 KQTNNKGYMNIK 273
NN Y NIK
Sbjct: 67 DNENNVLYKNIK 78
>ref|NP_245082.1| FtsQ [Pasteurella multocida] gi|12720362|gb|AAK02229.1| FtsQ
[Pasteurella multocida]
Length = 258
Score = 32.3 bits (72), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 334 QGIKNSQSLSLPMLMNTQLSSLCSYILCCLFAFFFLY 224
QG+K S + M+ N +L+ ++LCC+ FF+ Y
Sbjct: 10 QGVKKSNETKIGMIKNLKLA----FLLCCIAVFFYAY 42
>dbj|BAB86335.1| LTRPC6 [Homo sapiens]
Length = 1095
Score = 31.2 bits (69), Expect = 3.4
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 10/78 (12%)
Frame = -1
Query: 314 VSFSPNVNEYTTFFFMFIYPLLFVCFFFSLPYKEAFIMFDLIF*ESQLASDICQEY---- 147
V FS NV Y F +F Y LL F S+P+ +++ L+F ++ Q Y
Sbjct: 727 VVFSWNVVFYIAFLLLFAYVLLMD--FHSVPHPPELVLYSLVF--VLFCDEVRQWYVNGV 782
Query: 146 ------WNYIDRLVNFLF 111
WN +D L F F
Sbjct: 783 NYFTDLWNVMDTLGLFYF 800
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,484,584
Number of Sequences: 1393205
Number of extensions: 5056406
Number of successful extensions: 17796
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 17027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17732
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
